PITA_217 megaCluster: 9 Residual: 0.20

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_217	9	0.20	15	0	0.935039	0

Members

Displaying 1 - 39 of 39

TFBS DB TF

TFs	percTargets	pValue
HMX1_homeodomain_DBD_monomeric_11_1	0.157895	0.0000049

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.00000000000032	CCCCGCCCCCY	SP1_MA0079.2, Klf4_MA0039.2, SP1_MA0079.1, V$SP4_Q5_M01273, V$SP1_Q6_M00196, V$SP1_Q2_01_M00933, V$SP1_Q4_01_M00932, V$SP1_02_M01303, V$ZFP281_01_M01597, V$SP1_Q6_01_M00931, V$KLF7_03_M02773, V$SP1_03_M02281, V$GC_01_M00255, V$GKLF_02_M01588, V$UF1H3BETA_Q6_M01068, V$CKROX_Q2_M01175, V$MAZR_01_M00491, V$SP4_03_M02810, V$ZFP281_04_M02831, V$MAZ_Q6_M00649, V$ZBP89_Q4_M01816, V$KROX_Q6_M00982, V$ZNF219_01_M01122, V$SP1SP3_Q4_M01219, V$MAZ_Q6_01_M02023, V$CACD_01_M01113, V$EGR1_06_M02744, V$EGR1_Q6_M01873, V$SP1_01_M00008, V$BCL6B_04_M02844, V$EKLF_Q5_M01874, V$SMAD4_04_M02898, V$KLF15_Q2_M01714, V$ETF_Q6_M00695, V$WT1_Q6_01_M02036, V$E2F3_Q6_M02089, V$SP2_01_M01783, V$ZFP740_03_M02834, V$CACBINDINGPROTEIN_Q6_M00720, V$ZFP410_04_M02936, V$FKLF_Q5_M01837, V$CACCCBINDINGFACTOR_Q6_M00721, V$MZF1_01_M00083, Klf7.1, Sp4.1, Zfp281.2, Egr1.1, Bcl6b.2, Smad3.1, Zfp740.1, Zfp410.1, Ascl2.2, Zif268.1, Sox13.2, SP4_C2H2_full_monomeric_17_1, KLF16_C2H2_DBD_monomeric_11_1, SP1_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, KLF14_C2H2_DBD_monomeric_14_1, SP3_C2H2_DBD_monomeric_11_1, ZNF740_C2H2_full_monomeric_10_1, Klf12_C2H2_DBD_monomeric_15_1, KLF13_C2H2_full_monomeric_18_1, Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1, Zfp740_C2H2_DBD_monomeric_10_1	0.0000018	AAAANAAWAAAA	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.35	ACCGCG	NA	1.36	CGCCAKCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.51	TCGTAG	NA	NA	0.66	TCTAANNC	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

13478 dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) Details for - - dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13478 Tuberculist Genomic Region	107271 tyrosyl-tRNA synthetase Details for - - tyrosyl-tRNA synthetase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107271 Tuberculist Genomic Region
108062 cleavage stimulation factor, 3' pre-RNA subunit 2 Details for RP23-182N4.2 - cleavage stimulation factor, 3' pre-RNA subunit 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108062 Tuberculist Genomic Region	108156 methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase Details for - - methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108156 Tuberculist Genomic Region
109689 arrestin, beta 1 Details for - - arrestin, beta 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109689 Tuberculist Genomic Region	110750 chromosome segregation 1-like (S. cerevisiae) Details for RP23-19L12.9 - chromosome segregation 1-like (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110750 Tuberculist Genomic Region
12567 cyclin-dependent kinase 4 Details for - - cyclin-dependent kinase 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12567 Tuberculist Genomic Region	14251 flotillin 1 Details for - - flotillin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14251 Tuberculist Genomic Region
18974 polymerase (DNA directed), epsilon 2 (p59 subunit) Details for - - polymerase (DNA directed), epsilon 2 (p59 subunit) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18974 Tuberculist Genomic Region	19076 DNA primase, p58 subunit Details for - - DNA primase, p58 subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19076 Tuberculist Genomic Region
19714 REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) Details for - - REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19714 Tuberculist Genomic Region	207965 valosin containing protein lysine (K) methyltransferase Details for - - valosin containing protein lysine (K) methyltransferase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 207965 Tuberculist Genomic Region
211389 sulfite oxidase Details for - - sulfite oxidase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 211389 Tuberculist Genomic Region	218639 ADP-ribosylation factor-like 15 Details for - - ADP-ribosylation factor-like 15 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218639 Tuberculist Genomic Region
226432 importin 9 Details for - - importin 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226432 Tuberculist Genomic Region	229473 RIKEN cDNA D930015E06 gene Details for - - RIKEN cDNA D930015E06 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229473 Tuberculist Genomic Region
232853 zinc finger protein 954 Details for - - zinc finger protein 954 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 232853 Tuberculist Genomic Region	234797 RIKEN cDNA 6430548M08 gene Details for - - RIKEN cDNA 6430548M08 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 234797 Tuberculist Genomic Region
240168 RAS, guanyl releasing protein 3 Details for - - RAS, guanyl releasing protein 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 240168 Tuberculist Genomic Region	319845 Bardet-Biedl syndrome 9 (human) Details for - - Bardet-Biedl syndrome 9 (human) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 319845 Tuberculist Genomic Region
320088 RIKEN cDNA C030034L19 gene Details for - - RIKEN cDNA C030034L19 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320088 Tuberculist Genomic Region	320528 vacuolar protein sorting 13C (yeast) Details for - - vacuolar protein sorting 13C (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320528 Tuberculist Genomic Region
330361 GC-rich sequence DNA binding factor 2 Details for - - GC-rich sequence DNA binding factor 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 330361 Tuberculist Genomic Region	52665 enoyl Coenzyme A hydratase domain containing 1 Details for - - enoyl Coenzyme A hydratase domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 52665 Tuberculist Genomic Region
66179 2-oxoglutarate and iron-dependent oxygenase domain containing 3 Details for RP23-349B15.2 - 2-oxoglutarate and iron-dependent oxygenase domain containing 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66179 Tuberculist Genomic Region	66881 prenylcysteine oxidase 1 Details for - - prenylcysteine oxidase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66881 Tuberculist Genomic Region
67054 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase Details for - - phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67054 Tuberculist Genomic Region	67429 NudC domain containing 1 Details for - - NudC domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67429 Tuberculist Genomic Region
68023 peptide deformylase (mitochondrial) Details for - - peptide deformylase (mitochondrial) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68023 Tuberculist Genomic Region	68845 PIH1 domain containing 1 Details for - - PIH1 domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68845 Tuberculist Genomic Region
73341 Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 Details for RP23-372E6.1 - Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73341 Tuberculist Genomic Region	75146 transmembrane protein 180 Details for - - transmembrane protein 180 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75146 Tuberculist Genomic Region
77065 integrator complex subunit 7 Details for - - integrator complex subunit 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 77065 Tuberculist Genomic Region	77744 bora, aurora kinase A activator Details for - - bora, aurora kinase A activator GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 77744 Tuberculist Genomic Region
97487 CKLF-like MARVEL transmembrane domain containing 4 Details for - - CKLF-like MARVEL transmembrane domain containing 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 97487 Tuberculist Genomic Region	98732 RAB3 GTPase activating protein subunit 2 Details for - - RAB3 GTPase activating protein subunit 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 98732 Tuberculist Genomic Region
20148 dehydrogenase/reductase (SDR family) member 3 Details for RP23-133N19.1 - dehydrogenase/reductase (SDR family) member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20148 Tuberculist Genomic Region	216190 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 Details for - - adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 216190 Tuberculist Genomic Region
333433 glycerol-3-phosphate dehydrogenase 1-like Details for - - glycerol-3-phosphate dehydrogenase 1-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 333433 Tuberculist Genomic Region

Summary

Members

Details for - - dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)

Details for - - tyrosyl-tRNA synthetase

Details for RP23-182N4.2 - cleavage stimulation factor, 3' pre-RNA subunit 2

Details for - - methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase

Details for - - arrestin, beta 1

Details for RP23-19L12.9 - chromosome segregation 1-like (S. cerevisiae)

Details for - - cyclin-dependent kinase 4

Details for - - flotillin 1

Details for - - polymerase (DNA directed), epsilon 2 (p59 subunit)

Details for - - DNA primase, p58 subunit

Details for - - REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)

Details for - - valosin containing protein lysine (K) methyltransferase

Details for - - sulfite oxidase

Details for - - ADP-ribosylation factor-like 15

Details for - - importin 9

Details for - - RIKEN cDNA D930015E06 gene

Details for - - zinc finger protein 954

Details for - - RIKEN cDNA 6430548M08 gene

Details for - - RAS, guanyl releasing protein 3

Details for - - Bardet-Biedl syndrome 9 (human)

Details for - - RIKEN cDNA C030034L19 gene

Details for - - vacuolar protein sorting 13C (yeast)

Details for - - GC-rich sequence DNA binding factor 2

Details for - - enoyl Coenzyme A hydratase domain containing 1

Details for RP23-349B15.2 - 2-oxoglutarate and iron-dependent oxygenase domain containing 3

Details for - - prenylcysteine oxidase 1

Details for - - phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase

Details for - - NudC domain containing 1

Details for - - peptide deformylase (mitochondrial)

Details for - - PIH1 domain containing 1

Details for RP23-372E6.1 - Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6

Details for - - transmembrane protein 180

Details for - - integrator complex subunit 7

Details for - - bora, aurora kinase A activator

Details for - - CKLF-like MARVEL transmembrane domain containing 4

Details for - - RAB3 GTPase activating protein subunit 2

Details for RP23-133N19.1 - dehydrogenase/reductase (SDR family) member 3

Details for - - adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2

Details for - - glycerol-3-phosphate dehydrogenase 1-like

GO Terms

3p UTR PITA