PITA_220 megaCluster: 4 Residual: 0.17

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_220 4 0.17 15 0 0.949795 0

Members

Displaying 1 - 31 of 31
100039353 ribosomal protein L34 pseudogene

Details for - - ribosomal protein L34 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100039353

Tuberculist Genomic Region

100502606 predicted gene, 19279

Details for - - predicted gene, 19279

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100502606

Tuberculist Genomic Region

102857 solute carrier family 6 (neurotransmitter transporter, creatine), member 8

Details for RP23-329M9.4 - solute carrier family 6 (neurotransmitter transporter, creatine), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102857

Tuberculist Genomic Region

104103 antisense Igf2r RNA

Details for - - antisense Igf2r RNA

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104103

Tuberculist Genomic Region

108767 proline-rich nuclear receptor coactivator 1

Details for RP23-12I24.7 - proline-rich nuclear receptor coactivator 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108767

Tuberculist Genomic Region

109225 membrane-spanning 4-domains, subfamily A, member 7

Details for - - membrane-spanning 4-domains, subfamily A, member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109225

Tuberculist Genomic Region

109754 cytochrome b5 reductase 3

Details for - - cytochrome b5 reductase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109754

Tuberculist Genomic Region

12042 B cell leukemia/lymphoma 10

Details for - - B cell leukemia/lymphoma 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12042

Tuberculist Genomic Region

13000 casein kinase 2, alpha prime polypeptide

Details for - - casein kinase 2, alpha prime polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13000

Tuberculist Genomic Region

17931 protein phosphatase 1, regulatory (inhibitor) subunit 12A

Details for - - protein phosphatase 1, regulatory (inhibitor) subunit 12A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17931

Tuberculist Genomic Region

18787 serine (or cysteine) peptidase inhibitor, clade E, member 1

Details for - - serine (or cysteine) peptidase inhibitor, clade E, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18787

Tuberculist Genomic Region

19219 prostaglandin E receptor 4 (subtype EP4)

Details for - - prostaglandin E receptor 4 (subtype EP4)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19219

Tuberculist Genomic Region

192195 ash1 (absent, small, or homeotic)-like (Drosophila)

Details for - - ash1 (absent, small, or homeotic)-like (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 192195

Tuberculist Genomic Region

19248 protein tyrosine phosphatase, non-receptor type 12

Details for - - protein tyrosine phosphatase, non-receptor type 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19248

Tuberculist Genomic Region

192657 elongation factor RNA polymerase II 2

Details for - - elongation factor RNA polymerase II 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 192657

Tuberculist Genomic Region

20288 macrophage scavenger receptor 1

Details for - - macrophage scavenger receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20288

Tuberculist Genomic Region

20375 spleen focus forming virus (SFFV) proviral integration oncogene

Details for RP23-20F9.1 - spleen focus forming virus (SFFV) proviral integration oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20375

Tuberculist Genomic Region

21353 TRAF family member-associated Nf-kappa B activator

Details for RP23-1O11.1 - TRAF family member-associated Nf-kappa B activator

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21353

Tuberculist Genomic Region

21857 tissue inhibitor of metalloproteinase 1

Details for RP23-132C19.3 - tissue inhibitor of metalloproteinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21857

Tuberculist Genomic Region

225929 protein associated with topoisomerase II homolog 1 (yeast)

Details for - - protein associated with topoisomerase II homolog 1 (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225929

Tuberculist Genomic Region

237928 phosphatase, orphan 1

Details for RP23-151M22.3 - phosphatase, orphan 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237928

Tuberculist Genomic Region

268490 LSM12 homolog (S. cerevisiae)

Details for RP23-167N11.2 - LSM12 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 268490

Tuberculist Genomic Region

26900 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked

Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26900

Tuberculist Genomic Region

53621 CCR4-NOT transcription complex, subunit 4

Details for - - CCR4-NOT transcription complex, subunit 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53621

Tuberculist Genomic Region

54446 nuclear factor of activated T cells 5

Details for - - nuclear factor of activated T cells 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54446

Tuberculist Genomic Region

67154 metadherin

Details for - - metadherin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67154

Tuberculist Genomic Region

69562 cyclin-dependent kinase 13

Details for - - cyclin-dependent kinase 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69562

Tuberculist Genomic Region

71398 RIKEN cDNA 5430427O19 gene

Details for RP23-311G7.1 - RIKEN cDNA 5430427O19 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71398

Tuberculist Genomic Region

75089 UHRF1 (ICBP90) binding protein 1-like

Details for - - UHRF1 (ICBP90) binding protein 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75089

Tuberculist Genomic Region

11816 apolipoprotein E

Details for - - apolipoprotein E

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11816

Tuberculist Genomic Region

18689 per-hexamer repeat gene 4

Details for - - per-hexamer repeat gene 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18689

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_IRX4_01_M01410 0.148148 0.0000369

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0023 TTTTNYTTCCT SPI1_MA0080.2, V$SPI1_Q5_M02031, V$ELF1_Q5_M01266 140 ATRAAAATTWTA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.98 CGMCGC NA 1.1 NNCGGCCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.54 CGACGG NA NA 0.88 GGTAAATA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-224 0.521739 0.0000109

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