PITA_31 megaCluster: 4 Residual: 0.29

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_31 4 0.29 14 0 0.811007 0

Members

Displaying 1 - 44 of 44
100217461 small nucleolar RNA, C/D box 89

Details for - - small nucleolar RNA, C/D box 89

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100217461

Tuberculist Genomic Region

11773 Casitas B-lineage lymphoma-like 1

Details for - - Casitas B-lineage lymphoma-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104836

Tuberculist Genomic Region

12051 adaptor-related protein complex 2, mu 1 subunit

Details for - - adaptor-related protein complex 2, mu 1 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11773

Tuberculist Genomic Region

12153 B cell leukemia/lymphoma 3

Details for - - B cell leukemia/lymphoma 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12051

Tuberculist Genomic Region

13424 bone morphogenetic protein 1

Details for - - bone morphogenetic protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12153

Tuberculist Genomic Region

14123 dynein cytoplasmic 1 heavy chain 1

Details for - - dynein cytoplasmic 1 heavy chain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13424

Tuberculist Genomic Region

14735 fibrosin

Details for - - fibrosin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14123

Tuberculist Genomic Region

16323 glypican 4

Details for RP23-309D15.3 - glypican 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14735

Tuberculist Genomic Region

17087 inhibin beta-A

Details for - - inhibin beta-A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16323

Tuberculist Genomic Region

17390 lymphocyte antigen 96

Details for - - lymphocyte antigen 96

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17087

Tuberculist Genomic Region

19697 matrix metallopeptidase 2

Details for - - matrix metallopeptidase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17390

Tuberculist Genomic Region

20017 v-rel reticuloendotheliosis viral oncogene homolog A (avian)

Details for - - v-rel reticuloendotheliosis viral oncogene homolog A (avian)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19697

Tuberculist Genomic Region

20288 polymerase (RNA) I polypeptide B

Details for RP24-388N11.1 - polymerase (RNA) I polypeptide B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20017

Tuberculist Genomic Region

20544 macrophage scavenger receptor 1

Details for - - macrophage scavenger receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20288

Tuberculist Genomic Region

20583 solute carrier family 9 (sodium/hydrogen exchanger), member 1

Details for RP23-32C12.6 - solute carrier family 9 (sodium/hydrogen exchanger), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20544

Tuberculist Genomic Region

216080 snail homolog 2 (Drosophila)

Details for - - snail homolog 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20583

Tuberculist Genomic Region

226976 ubiquitin-conjugating enzyme E2D 1

Details for - - ubiquitin-conjugating enzyme E2D 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216080

Tuberculist Genomic Region

227399 KAT8 regulatory NSL complex subunit 3

Details for - - KAT8 regulatory NSL complex subunit 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226976

Tuberculist Genomic Region

228543 diphosphoinositol pentakisphosphate kinase 2

Details for - - diphosphoinositol pentakisphosphate kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227399

Tuberculist Genomic Region

229542 ras homolog gene family, member V

Details for RP23-46P4.4 - ras homolog gene family, member V

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228543

Tuberculist Genomic Region

258643 GATA zinc finger domain containing 2B

Details for - - GATA zinc finger domain containing 2B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229542

Tuberculist Genomic Region

277203 olfactory receptor 1160

Details for RP23-131J21.1 - olfactory receptor 1160

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258643

Tuberculist Genomic Region

382034 transmembrane 4 L six family member 19

Details for - - transmembrane 4 L six family member 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 277203

Tuberculist Genomic Region

52118 genetic suppressor element 1

Details for - - genetic suppressor element 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382034

Tuberculist Genomic Region

546695 poliovirus receptor

Details for - - poliovirus receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52118

Tuberculist Genomic Region

57261 ribosomal protein L12 pseudogene

Details for - - ribosomal protein L12 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 546695

Tuberculist Genomic Region

70249 bromodomain containing 4

Details for RP24-236O3.1 - bromodomain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57261

Tuberculist Genomic Region

70425 RIKEN cDNA 3100002H09 gene

Details for - - RIKEN cDNA 3100002H09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70249

Tuberculist Genomic Region

74440 casein kinase 1, gamma 3

Details for - - casein kinase 1, gamma 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70425

Tuberculist Genomic Region

75345 c-Maf inducing protein

Details for - - c-Maf inducing protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74440

Tuberculist Genomic Region

76551 SLAM family member 7

Details for - - SLAM family member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75345

Tuberculist Genomic Region

78825 coiled-coil domain containing 6

Details for - - coiled-coil domain containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76551

Tuberculist Genomic Region

94352 desumoylating isopeptidase 2

Details for - - desumoylating isopeptidase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78825

Tuberculist Genomic Region

14182 lysyl oxidase-like 2

Details for - - lysyl oxidase-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94352

Tuberculist Genomic Region

18987 fibroblast growth factor receptor 1

Details for - - fibroblast growth factor receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14182

Tuberculist Genomic Region

22224 POU domain, class 2, transcription factor 2

Details for - - POU domain, class 2, transcription factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18987

Tuberculist Genomic Region

22770 ubiquitin specific peptidase 10

Details for - - ubiquitin specific peptidase 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22224

Tuberculist Genomic Region

241621 zinc fingers and homeoboxes 1

Details for - - zinc fingers and homeoboxes 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22770

Tuberculist Genomic Region

58182 predicted gene 13981

Details for - - predicted gene 13981

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241621

Tuberculist Genomic Region

94112 prokineticin receptor 1

Details for - - prokineticin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58182

Tuberculist Genomic Region

109754 mediator complex subunit 15

Details for - - mediator complex subunit 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94112

Tuberculist Genomic Region

21923 cytochrome b5 reductase 3

Details for - - cytochrome b5 reductase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109754

Tuberculist Genomic Region

54383 tenascin C

Details for RP24-144L11.1 - tenascin C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21923

Tuberculist Genomic Region

Details for RP23-467J23.1 - polyhomeotic-like 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54383

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_NFKB_Q6_01_M00774 0.475 0.0000589

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000000042 AAANAAAAMAAA NA 140 TTTWWKKTTTNT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.98 TCGCCG NA 0.97 NGCGCCGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.57 CGGGCG NA NA 0.68 ACGGGNGC NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-296-5p 0.677419 0.00000183

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-339-3p 0.171429 0.0000301

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