PITA_35 megaCluster: 10 Residual: 0.20

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_35	10	0.20	15	0	0.929789	0

Members

Displaying 1 - 42 of 42

TFBS DB TF

TFs	percTargets	pValue
Zfp410.1	0.95	0.00000865

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.038	AAAAAGAAARAA	NA	0.0012	GCCCCGCCCCN	SP1_MA0079.2, Klf4_MA0039.2, V$SP4_Q5_M01273, V$SP1_Q6_M00196, V$SP1_Q4_01_M00932, V$SP1_Q6_01_M00931, V$SP1_Q2_01_M00933, V$SP1_02_M01303, V$GC_01_M00255, V$KLF7_03_M02773, V$GKLF_02_M01588, V$SP1_03_M02281, V$UF1H3BETA_Q6_M01068, V$ZFP281_01_M01597, V$SP4_03_M02810, V$MAZR_01_M00491, V$ZBP89_Q4_M01816, V$CKROX_Q2_M01175, V$MAZ_Q6_01_M02023, V$BCL6B_04_M02844, V$ETF_Q6_M00695, V$SMAD4_04_M02898, V$EGR1_06_M02744, V$SP2_01_M01783, V$SP1_01_M00008, V$EGR1_Q6_M01873, V$KROX_Q6_M00982, V$MAZ_Q6_M00649, V$ZFP410_04_M02936, V$SP1SP3_Q4_M01219, V$ZFP281_04_M02831, V$E2F3_Q6_M02089, V$ZNF219_01_M01122, V$CACD_01_M01113, V$FKLF_Q5_M01837, V$KLF15_Q2_M01714, V$WT1_Q6_01_M02036, V$EKLF_Q5_M01874, V$ZFP740_03_M02834, V$FPM315_01_M01587, V$CACBINDINGPROTEIN_Q6_M00720, V$EGR_Q6_M00807, V$CACCCBINDINGFACTOR_Q6_M00721, Klf7.1, Sp4.1, Bcl6b.2, Egr1.1, Smad3.1, Zfp410.1, Zfp281.2, Zfp740.1, Sp4.2, SP1_C2H2_DBD_monomeric_11_1, KLF16_C2H2_DBD_monomeric_11_1, SP4_C2H2_full_monomeric_17_1, SP3_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, SP8_C2H2_DBD_monomeric_12_1, KLF13_C2H2_full_monomeric_18_1, Klf12_C2H2_DBD_monomeric_15_1, ZNF740_C2H2_full_monomeric_10_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.26	TCGCGT	NA	1.34	AGCGNGCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.56	TAANGACG	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-1306-5p	0.363636	0.0000162

100201 transmembrane protein 64 Details for RP23-23D11.2 - transmembrane protein 64 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100201 Tuberculist Genomic Region	102334 ankyrin repeat domain 10 Details for - - ankyrin repeat domain 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 102334 Tuberculist Genomic Region
106952 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 Details for - - ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 106952 Tuberculist Genomic Region	110639 phosphoribosyl pyrophosphate synthetase 2 Details for RP23-139P21.4 - phosphoribosyl pyrophosphate synthetase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110639 Tuberculist Genomic Region
12419 chromobox 5 Details for - - chromobox 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12419 Tuberculist Genomic Region	13006 structural maintenance of chromosomes 3 Details for - - structural maintenance of chromosomes 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13006 Tuberculist Genomic Region
19720 tripartite motif-containing 27 Details for - - tripartite motif-containing 27 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19720 Tuberculist Genomic Region	20933 mediator complex subunit 22 Details for RP23-414L19.3 - mediator complex subunit 22 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20933 Tuberculist Genomic Region
218973 WD repeat and HMG-box DNA binding protein 1 Details for - - WD repeat and HMG-box DNA binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218973 Tuberculist Genomic Region	22017 thiopurine methyltransferase Details for - - thiopurine methyltransferase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22017 Tuberculist Genomic Region
241633 ATPase, class I, type 8B, member 4 Details for RP23-460B5.1 - ATPase, class I, type 8B, member 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 241633 Tuberculist Genomic Region	66310 dpy-30 homolog (C. elegans) Details for - - dpy-30 homolog (C. elegans) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66310 Tuberculist Genomic Region
68023 peptide deformylase (mitochondrial) Details for - - peptide deformylase (mitochondrial) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68023 Tuberculist Genomic Region	68801 ELOVL family member 5, elongation of long chain fatty acids (yeast) Details for - - ELOVL family member 5, elongation of long chain fatty acids (yeast) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68801 Tuberculist Genomic Region
69048 solute carrier family 30 (zinc transporter), member 5 Details for - - solute carrier family 30 (zinc transporter), member 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69048 Tuberculist Genomic Region	69723 RPA interacting protein Details for DN-393H17.1 - RPA interacting protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69723 Tuberculist Genomic Region
69726 SET and MYND domain containing 3 Details for - - SET and MYND domain containing 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69726 Tuberculist Genomic Region	72544 exosome component 6 Details for - - exosome component 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72544 Tuberculist Genomic Region
72722 family with sequence similarity 98, member A Details for - - family with sequence similarity 98, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72722 Tuberculist Genomic Region	72787 NDC1 transmembrane nucleoporin Details for RP23-392J14.4 - NDC1 transmembrane nucleoporin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72787 Tuberculist Genomic Region
14544 guanine deaminase Details for - - guanine deaminase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14544 Tuberculist Genomic Region	192231 hexamethylene bis-acetamide inducible 1 Details for RP23-358E19.4 - hexamethylene bis-acetamide inducible 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 192231 Tuberculist Genomic Region
21781 transcription factor Dp 1 Details for - - transcription factor Dp 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21781 Tuberculist Genomic Region	22121 ribosomal protein L13A Details for - - ribosomal protein L13A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22121 Tuberculist Genomic Region
380686 cannabinoid receptor interacting protein 1 Details for RP23-348N2.3 - cannabinoid receptor interacting protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 380686 Tuberculist Genomic Region	69577 FAST kinase domains 3 Details for - - FAST kinase domains 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69577 Tuberculist Genomic Region
70021 5'-nucleotidase domain containing 2 Details for - - 5'-nucleotidase domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70021 Tuberculist Genomic Region	74476 RIKEN cDNA 4933439C10 gene Details for - - RIKEN cDNA 4933439C10 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74476 Tuberculist Genomic Region
83669 WD repeat domain 6 Details for - - WD repeat domain 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 83669 Tuberculist Genomic Region	110173 mannosidase, beta A, lysosomal Details for - - mannosidase, beta A, lysosomal GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110173 Tuberculist Genomic Region
18968 polymerase (DNA directed), alpha 1 Details for RP23-53K18.2 - polymerase (DNA directed), alpha 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18968 Tuberculist Genomic Region	207818 small cell adhesion glycoprotein Details for - - small cell adhesion glycoprotein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 207818 Tuberculist Genomic Region
22154 tubulin, beta 5 class I Details for RP24-180B11.2 - tubulin, beta 5 class I GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22154 Tuberculist Genomic Region	242474 transmembrane protein 245 Details for RP23-455B1.3 - transmembrane protein 245 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 242474 Tuberculist Genomic Region
328186 predicted gene 10336 Details for - - predicted gene 10336 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 328186 Tuberculist Genomic Region	54486 hematopoietic prostaglandin D synthase Details for - - hematopoietic prostaglandin D synthase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54486 Tuberculist Genomic Region
72503 RIKEN cDNA 2610507B11 gene Details for RP23-185A18.9 - RIKEN cDNA 2610507B11 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72503 Tuberculist Genomic Region	12566 cyclin-dependent kinase 2 Details for - - cyclin-dependent kinase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12566 Tuberculist Genomic Region
217653 MIS18 binding protein 1 Details for - - MIS18 binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 217653 Tuberculist Genomic Region	269702 M-phase phosphoprotein 9 Details for - - M-phase phosphoprotein 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269702 Tuberculist Genomic Region
66531 COX assembly mitochondrial protein 2 Details for - - COX assembly mitochondrial protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66531 Tuberculist Genomic Region	73086 ribosomal protein S6 kinase, polypeptide 5 Details for - - ribosomal protein S6 kinase, polypeptide 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73086 Tuberculist Genomic Region

Summary

Members

Details for RP23-23D11.2 - transmembrane protein 64

Details for - - ankyrin repeat domain 10

Details for - - ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3

Details for RP23-139P21.4 - phosphoribosyl pyrophosphate synthetase 2

Details for - - chromobox 5

Details for - - structural maintenance of chromosomes 3

Details for - - tripartite motif-containing 27

Details for RP23-414L19.3 - mediator complex subunit 22

Details for - - WD repeat and HMG-box DNA binding protein 1

Details for - - thiopurine methyltransferase

Details for RP23-460B5.1 - ATPase, class I, type 8B, member 4

Details for - - dpy-30 homolog (C. elegans)

Details for - - peptide deformylase (mitochondrial)

Details for - - ELOVL family member 5, elongation of long chain fatty acids (yeast)

Details for - - solute carrier family 30 (zinc transporter), member 5

Details for DN-393H17.1 - RPA interacting protein

Details for - - SET and MYND domain containing 3

Details for - - exosome component 6

Details for - - family with sequence similarity 98, member A

Details for RP23-392J14.4 - NDC1 transmembrane nucleoporin

Details for - - guanine deaminase

Details for RP23-358E19.4 - hexamethylene bis-acetamide inducible 1

Details for - - transcription factor Dp 1

Details for - - ribosomal protein L13A

Details for RP23-348N2.3 - cannabinoid receptor interacting protein 1

Details for - - FAST kinase domains 3

Details for - - 5'-nucleotidase domain containing 2

Details for - - RIKEN cDNA 4933439C10 gene

Details for - - WD repeat domain 6

Details for - - mannosidase, beta A, lysosomal

Details for RP23-53K18.2 - polymerase (DNA directed), alpha 1

Details for - - small cell adhesion glycoprotein

Details for RP24-180B11.2 - tubulin, beta 5 class I

Details for RP23-455B1.3 - transmembrane protein 245

Details for - - predicted gene 10336

Details for - - hematopoietic prostaglandin D synthase

Details for RP23-185A18.9 - RIKEN cDNA 2610507B11 gene

Details for - - cyclin-dependent kinase 2

Details for - - MIS18 binding protein 1

Details for - - M-phase phosphoprotein 9

Details for - - COX assembly mitochondrial protein 2

Details for - - ribosomal protein S6 kinase, polypeptide 5

GO Terms

3p UTR PITA