PITA_46 megaCluster: 7 Residual: 0.17

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_46 7 0.17 15 0 0.941884 0

Members

Displaying 1 - 27 of 27
217333 tripartite motif-containing 47

Details for RP23-42F6.7 - tripartite motif-containing 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217333

Tuberculist Genomic Region

21770 protein phosphatase 2, regulatory subunit B', delta

Details for - - protein phosphatase 2, regulatory subunit B', delta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21770

Tuberculist Genomic Region

22719 zinc finger protein 61

Details for - - zinc finger protein 61

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22719

Tuberculist Genomic Region

230145 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12

Details for RP23-337N2.6 - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230145

Tuberculist Genomic Region

240066 zinc finger protein 870

Details for - - zinc finger protein 870

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240066

Tuberculist Genomic Region

244556 zinc finger protein 791

Details for - - zinc finger protein 791

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244556

Tuberculist Genomic Region

26371 cytosolic iron-sulfur protein assembly 1

Details for RP23-206D14.3 - cytosolic iron-sulfur protein assembly 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26371

Tuberculist Genomic Region

27061 B cell receptor associated protein 31

Details for RP23-329M9.5 - B cell receptor associated protein 31

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27061

Tuberculist Genomic Region

30841 lysine (K)-specific demethylase 2B

Details for - - lysine (K)-specific demethylase 2B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30841

Tuberculist Genomic Region

57344 arsenic (+3 oxidation state) methyltransferase

Details for - - arsenic (+3 oxidation state) methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57344

Tuberculist Genomic Region

66335 ATPase, H+ transporting, lysosomal V1 subunit C1

Details for - - ATPase, H+ transporting, lysosomal V1 subunit C1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66335

Tuberculist Genomic Region

66385 protein phosphatase 1, regulatory (inhibitor) subunit 7

Details for - - protein phosphatase 1, regulatory (inhibitor) subunit 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66385

Tuberculist Genomic Region

67013 OMA1 homolog, zinc metallopeptidase (S. cerevisiae)

Details for RP23-47A6.4 - OMA1 homolog, zinc metallopeptidase (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67013

Tuberculist Genomic Region

67015 coiled-coil domain containing 91

Details for RP23-298K1.1 - coiled-coil domain containing 91

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67015

Tuberculist Genomic Region

67392 RIKEN cDNA 4833420G17 gene

Details for - - RIKEN cDNA 4833420G17 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67392

Tuberculist Genomic Region

67452 patatin-like phospholipase domain containing 8

Details for - - patatin-like phospholipase domain containing 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67452

Tuberculist Genomic Region

68347 RIKEN cDNA 0610011F06 gene

Details for - - RIKEN cDNA 0610011F06 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68347

Tuberculist Genomic Region

69672 thioredoxin domain containing 15

Details for - - thioredoxin domain containing 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69672

Tuberculist Genomic Region

69790 mediator complex subunit 30

Details for - - mediator complex subunit 30

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69790

Tuberculist Genomic Region

72154 zinc finger protein 157

Details for - - zinc finger protein 157

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72154

Tuberculist Genomic Region

73694 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73694

Tuberculist Genomic Region

78255 Ral GEF with PH domain and SH3 binding motif 2

Details for - - Ral GEF with PH domain and SH3 binding motif 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78255

Tuberculist Genomic Region

233056 zinc finger protein 790

Details for - - zinc finger protein 790

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233056

Tuberculist Genomic Region

58193 exostoses (multiple)-like 2

Details for - - exostoses (multiple)-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58193

Tuberculist Genomic Region

66841 electron transferring flavoprotein, dehydrogenase

Details for - - electron transferring flavoprotein, dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66841

Tuberculist Genomic Region

68839 ankyrin repeat domain 46

Details for - - ankyrin repeat domain 46

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68839

Tuberculist Genomic Region

69596 adaptor-related protein 5 complex, sigma 1 subunit

Details for RP23-387C21.2 - adaptor-related protein 5 complex, sigma 1 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69596

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
1100 CCGCCTCCTCC V$SP1SP3_Q4_M01219, Sp4.1, Egr1.1 3.7 AAMAGANACANA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.29 ACGCCG NA 1.61 CGNTGCGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.44 CGTCAA NA NA 0.77 GTCNTCAA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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