PITA_49 megaCluster: 3 Residual: 0.18

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_49 3 0.18 15 0 0.941095 0

Members

Displaying 1 - 31 of 31
100033459 pyrin domain containing 3

Details for - - pyrin domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100033459

Tuberculist Genomic Region

100312473 vomeronasal 1 receptor 86

Details for - - vomeronasal 1 receptor 86

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100312473

Tuberculist Genomic Region

101023 zinc finger protein 513

Details for - - zinc finger protein 513

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101023

Tuberculist Genomic Region

106759 toll-like receptor adaptor molecule 1

Details for - - toll-like receptor adaptor molecule 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106759

Tuberculist Genomic Region

108154 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6

Details for - - a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108154

Tuberculist Genomic Region

11603 agrin

Details for RP23-139J18.2 - agrin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11603

Tuberculist Genomic Region

12370 caspase 8

Details for - - caspase 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12370

Tuberculist Genomic Region

14064 coagulation factor II (thrombin) receptor-like 2

Details for - - coagulation factor II (thrombin) receptor-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14064

Tuberculist Genomic Region

14118 fibrillin 1

Details for RP23-368I1.1 - fibrillin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14118

Tuberculist Genomic Region

14289 formyl peptide receptor 2

Details for - - formyl peptide receptor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14289

Tuberculist Genomic Region

170759 ATPase type 13A1

Details for - - ATPase type 13A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170759

Tuberculist Genomic Region

18991 POU domain, class 3, transcription factor 1

Details for RP23-230F2.2 - POU domain, class 3, transcription factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18991

Tuberculist Genomic Region

19275 protein tyrosine phosphatase, receptor type, N

Details for - - protein tyrosine phosphatase, receptor type, N

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19275

Tuberculist Genomic Region

20847 signal transducer and activator of transcription 2

Details for - - signal transducer and activator of transcription 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20847

Tuberculist Genomic Region

20853 staufen (RNA binding protein) homolog 1 (Drosophila)

Details for RP23-19L12.1 - staufen (RNA binding protein) homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20853

Tuberculist Genomic Region

216874 calmodulin binding transcription activator 2

Details for DN-183N8.19-006 - calmodulin binding transcription activator 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216874

Tuberculist Genomic Region

223693 transmembrane protein 184b

Details for - - transmembrane protein 184b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223693

Tuberculist Genomic Region

224794 ectonucleotide pyrophosphatase/phosphodiesterase 4

Details for - - ectonucleotide pyrophosphatase/phosphodiesterase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224794

Tuberculist Genomic Region

231430 cytochrome c oxidase assembly protein 18

Details for - - cytochrome c oxidase assembly protein 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231430

Tuberculist Genomic Region

243771 poly (ADP-ribose) polymerase family, member 12

Details for - - poly (ADP-ribose) polymerase family, member 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243771

Tuberculist Genomic Region

326623 tumor necrosis factor (ligand) superfamily, member 15

Details for - - tumor necrosis factor (ligand) superfamily, member 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 326623

Tuberculist Genomic Region

380863 transmembrane protein 171

Details for - - transmembrane protein 171

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 380863

Tuberculist Genomic Region

56738 molybdenum cofactor synthesis 1

Details for - - molybdenum cofactor synthesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56738

Tuberculist Genomic Region

57444 interferon-stimulated protein

Details for - - interferon-stimulated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57444

Tuberculist Genomic Region

64381 membrane-spanning 4-domains, subfamily A, member 8A

Details for - - membrane-spanning 4-domains, subfamily A, member 8A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64381

Tuberculist Genomic Region

65107 low-density lipoprotein receptor-related protein 10

Details for - - low-density lipoprotein receptor-related protein 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65107

Tuberculist Genomic Region

67138 hect domain and RLD 6

Details for - - hect domain and RLD 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67138

Tuberculist Genomic Region

68497 apoptosis resistant E3 ubiquitin protein ligase 1

Details for - - apoptosis resistant E3 ubiquitin protein ligase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68497

Tuberculist Genomic Region

69538 anthrax toxin receptor 1

Details for - - anthrax toxin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69538

Tuberculist Genomic Region

74748 SLAM family member 8

Details for - - SLAM family member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74748

Tuberculist Genomic Region

75560 E1A binding protein p400

Details for - - E1A binding protein p400

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75560

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRF8_IRF_full_dimeric_14_1 0.466667 0.00000000000219

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000091 TTNCTTTCTGTT IRF2_MA0051.1, V$IRF2_Q6_M01882, V$IRF_Q6_M00772, V$IRF_Q6_01_M00972 0.0000064 AYTTTCTTYTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.87 TCCGCC Egr1.1, Smad3.1, Bcl6b.2 1.11 CCGAACGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.56 CGGCCG NA NA 0.67 GCATCNNG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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