PITA_59 megaCluster: 7 Residual: 0.23

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_59 7 0.23 15 0 0.901112 0

Members

Displaying 1 - 33 of 33
110147 euchromatic histone lysine N-methyltransferase 2

Details for RP23-349B4.3 - euchromatic histone lysine N-methyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110147

Tuberculist Genomic Region

11518 adducin 1 (alpha)

Details for - - adducin 1 (alpha)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11518

Tuberculist Genomic Region

17939 N-acetyl galactosaminidase, alpha

Details for - - N-acetyl galactosaminidase, alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17939

Tuberculist Genomic Region

18041 nitrogen fixation gene 1 (S. cerevisiae)

Details for RP23-220D12.8 - nitrogen fixation gene 1 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18041

Tuberculist Genomic Region

18415 heat shock protein 4 like

Details for - - heat shock protein 4 like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18415

Tuberculist Genomic Region

216156 WD repeat domain 18

Details for - - WD repeat domain 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216156

Tuberculist Genomic Region

225049 tetratricopeptide repeat domain 7

Details for - - tetratricopeptide repeat domain 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225049

Tuberculist Genomic Region

226646 NADH dehydrogenase (ubiquinone) Fe-S protein 2

Details for - - NADH dehydrogenase (ubiquinone) Fe-S protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226646

Tuberculist Genomic Region

228913 zinc finger protein 217

Details for RP23-233M15.1 - zinc finger protein 217

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228913

Tuberculist Genomic Region

228983 oxysterol binding protein-like 2

Details for RP23-16P3.1 - oxysterol binding protein-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228983

Tuberculist Genomic Region

230514 leptin receptor overlapping transcript

Details for RP23-31K16.1 - leptin receptor overlapping transcript

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230514

Tuberculist Genomic Region

23854 differentially expressed in FDCP 8

Details for - - differentially expressed in FDCP 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23854

Tuberculist Genomic Region

26889 ceroid-lipofuscinosis, neuronal 8

Details for - - ceroid-lipofuscinosis, neuronal 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26889

Tuberculist Genomic Region

269224 PAS domain containing serine/threonine kinase

Details for - - PAS domain containing serine/threonine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269224

Tuberculist Genomic Region

381280 Holliday junction recognition protein

Details for - - Holliday junction recognition protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381280

Tuberculist Genomic Region

382010 centrosomal protein 44

Details for - - centrosomal protein 44

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382010

Tuberculist Genomic Region

66194 pyrroline-5-carboxylate reductase-like

Details for - - pyrroline-5-carboxylate reductase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66194

Tuberculist Genomic Region

66368 RNA 3'-terminal phosphate cyclase

Details for - - RNA 3'-terminal phosphate cyclase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66368

Tuberculist Genomic Region

66822 F-box protein 25

Details for - - F-box protein 25

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66822

Tuberculist Genomic Region

67681 mitochondrial ribosomal protein L18

Details for - - mitochondrial ribosomal protein L18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67681

Tuberculist Genomic Region

68877 MAF1 homolog (S. cerevisiae)

Details for - - MAF1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68877

Tuberculist Genomic Region

73658 spinster homolog 1

Details for - - spinster homolog 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73658

Tuberculist Genomic Region

76478 4HAUS augmin-like complex, subunit 8

Details for - - 4HAUS augmin-like complex, subunit 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76478

Tuberculist Genomic Region

104799 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog

Details for - - VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104799

Tuberculist Genomic Region

12183 2,3-bisphosphoglycerate mutase

Details for - - 2,3-bisphosphoglycerate mutase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12183

Tuberculist Genomic Region

17268 Meis homeobox 1

Details for RP23-377H12.3 - Meis homeobox 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17268

Tuberculist Genomic Region

194126 myotubularin related protein 11

Details for - - myotubularin related protein 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 194126

Tuberculist Genomic Region

65099 interleukin-1 receptor-associated kinase 1 binding protein 1

Details for - - interleukin-1 receptor-associated kinase 1 binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65099

Tuberculist Genomic Region

68475 Sjogren's syndrome nuclear autoantigen 1

Details for RP23-132N23.16-003 - Sjogren's syndrome nuclear autoantigen 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68475

Tuberculist Genomic Region

72772 RAD50 interactor 1

Details for - - RAD50 interactor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72772

Tuberculist Genomic Region

74044 transcription termination factor, RNA polymerase II

Details for DN-358O3.2 - transcription termination factor, RNA polymerase II

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74044

Tuberculist Genomic Region

227620 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1

Details for RP23-47P18.3 - UDP-N-acteylglucosamine pyrophosphorylase 1-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227620

Tuberculist Genomic Region

69596 adaptor-related protein 5 complex, sigma 1 subunit

Details for RP23-387C21.2 - adaptor-related protein 5 complex, sigma 1 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69596

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ER81_02_M02065 0.424242 0.00000236

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
44000 AAACCAAACAA NA 97000 AGTTTRTTTTAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.18 GCGGAC NA 1.34 GTCCGCGA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.69 GCGTCG NA NA 0.71 GNGGGCCT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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