PITA_76 megaCluster: 5 Residual: 0.31

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_76 5 0.31 13 0 0.807912 0

Members

Displaying 1 - 43 of 43
106025 SHANK-associated RH domain interacting protein

Details for - - SHANK-associated RH domain interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106025

Tuberculist Genomic Region

109225 membrane-spanning 4-domains, subfamily A, member 7

Details for - - membrane-spanning 4-domains, subfamily A, member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109225

Tuberculist Genomic Region

110558 histocompatibility 2, Q region locus 9

Details for - - histocompatibility 2, Q region locus 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110558

Tuberculist Genomic Region

13179 decorin

Details for - - decorin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13179

Tuberculist Genomic Region

15932 iduronidase, alpha-L-

Details for - - iduronidase, alpha-L-

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15932

Tuberculist Genomic Region

19018 SCAN domain-containing 1

Details for - - SCAN domain-containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19018

Tuberculist Genomic Region

215160 rhomboid domain containing 2

Details for - - rhomboid domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215160

Tuberculist Genomic Region

21815 TGFB-induced factor homeobox 1

Details for - - TGFB-induced factor homeobox 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21815

Tuberculist Genomic Region

225010 lysocardiolipin acyltransferase 1

Details for RP23-294D3.1 - lysocardiolipin acyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225010

Tuberculist Genomic Region

233900 ring finger protein 40

Details for - - ring finger protein 40

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233900

Tuberculist Genomic Region

383435 membrane-spanning 4-domains, subfamily A, member 14

Details for - - membrane-spanning 4-domains, subfamily A, member 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 383435

Tuberculist Genomic Region

52837 thioredoxin-related transmembrane protein 4

Details for RP23-207F4.1 - thioredoxin-related transmembrane protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52837

Tuberculist Genomic Region

57319 sphingomyelin phosphodiesterase, acid-like 3A

Details for - - sphingomyelin phosphodiesterase, acid-like 3A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57319

Tuberculist Genomic Region

606736 RIKEN cDNA C920009B18 gene

Details for - - RIKEN cDNA C920009B18 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 606736

Tuberculist Genomic Region

66079 transmembrane protein 42

Details for - - transmembrane protein 42

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66079

Tuberculist Genomic Region

66168 glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)

Details for - - glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66168

Tuberculist Genomic Region

72324 plexin domain containing 1

Details for RP23-309H19.1 - plexin domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72324

Tuberculist Genomic Region

76884 cytoplasmic FMR1 interacting protein 2

Details for RP23-370F7.1 - cytoplasmic FMR1 interacting protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76884

Tuberculist Genomic Region

79059 NME/NM23 nucleoside diphosphate kinase 3

Details for - - NME/NM23 nucleoside diphosphate kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 79059

Tuberculist Genomic Region

80517 HERPUD family member 2

Details for MNCb-2040 - HERPUD family member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80517

Tuberculist Genomic Region

100302498 small nucleolar RNA, H/ACA box 21

Details for - - small nucleolar RNA, H/ACA box 21

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100302498

Tuberculist Genomic Region

110557 histocompatibility 2, Q region locus 6

Details for - - histocompatibility 2, Q region locus 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110557

Tuberculist Genomic Region

13481 dolichol-phosphate (beta-D) mannosyltransferase 2

Details for RP23-255P20.5 - dolichol-phosphate (beta-D) mannosyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13481

Tuberculist Genomic Region

13544 dishevelled 3, dsh homolog (Drosophila)

Details for - - dishevelled 3, dsh homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13544

Tuberculist Genomic Region

14705 Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)

Details for MNCb-2630 - Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14705

Tuberculist Genomic Region

16633 killer cell lectin-like receptor, subfamily A, member 2

Details for - - killer cell lectin-like receptor, subfamily A, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16633

Tuberculist Genomic Region

20304 chemokine (C-C motif) ligand 5

Details for RP23-320E6.2 - chemokine (C-C motif) ligand 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20304

Tuberculist Genomic Region

20612 sialic acid binding Ig-like lectin 1, sialoadhesin

Details for RP23-228H14.5 - sialic acid binding Ig-like lectin 1, sialoadhesin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20612

Tuberculist Genomic Region

22190 ubiquitin C

Details for - - ubiquitin C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22190

Tuberculist Genomic Region

257919 olfactory receptor 467

Details for - - olfactory receptor 467

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 257919

Tuberculist Genomic Region

26446 proteasome (prosome, macropain) subunit, beta type 3

Details for RP23-94N18.8 - proteasome (prosome, macropain) subunit, beta type 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26446

Tuberculist Genomic Region

266632 interleukin-1 receptor-associated kinase 4

Details for - - interleukin-1 receptor-associated kinase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 266632

Tuberculist Genomic Region

27081 zinc finger protein 275

Details for RP23-95K12.3 - zinc finger protein 275

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27081

Tuberculist Genomic Region

27355 phosphatase domain containing, paladin 1

Details for - - phosphatase domain containing, paladin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27355

Tuberculist Genomic Region

30839 F-box and WD-40 domain protein 5

Details for RP23-47P18.14-001 - F-box and WD-40 domain protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30839

Tuberculist Genomic Region

327942 phosphatidylinositol glycan anchor biosynthesis, class L

Details for RP23-234K24.2 - phosphatidylinositol glycan anchor biosynthesis, class L

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327942

Tuberculist Genomic Region

328833 triggering receptor expressed on myeloid cells-like 2

Details for - - triggering receptor expressed on myeloid cells-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 328833

Tuberculist Genomic Region

623174 predicted gene 6404

Details for - - predicted gene 6404

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 623174

Tuberculist Genomic Region

74919 solute carrier family 35, member F6

Details for - - solute carrier family 35, member F6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74919

Tuberculist Genomic Region

75901 DCP1 decapping enzyme homolog A (S. cerevisiae)

Details for - - DCP1 decapping enzyme homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75901

Tuberculist Genomic Region

94178 mucolipin 1

Details for - - mucolipin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94178

Tuberculist Genomic Region

12266 complement component 3

Details for - - complement component 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12266

Tuberculist Genomic Region

140780 BMP2 inducible kinase

Details for - - BMP2 inducible kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140780

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Tgif2.1 0.263158 0.0000104

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.098 WWGGAAAASAAW NFATC2_MA0152.1, Sox2_MA0143.1 190 AAWAACACAAA V$FOXP1_01_M00987

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.91 GCGGGT V$GCM1_03_M02758, Gcm1.1, Smad3.1, GCM2_GCM_DBD_monomeric_10_1, GCM1_GCM_DBD_monomeric_10_1, GCM1_GCM_full_monomeric_11_1 0.94 GGAGACGC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.41 TTGCCC NA NA 0.62 NGAGTCGG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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