PITA_94 megaCluster: 3 Residual: 0.25

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_94 3 0.25 15 0 0.882037 0

Members

Displaying 1 - 41 of 41
100503422 predicted gene, 19684

Details for - - predicted gene, 19684

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503422

Tuberculist Genomic Region

100504160 predicted gene, 20094

Details for - - predicted gene, 20094

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504160

Tuberculist Genomic Region

108767 proline-rich nuclear receptor coactivator 1

Details for RP23-12I24.7 - proline-rich nuclear receptor coactivator 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108767

Tuberculist Genomic Region

109711 actinin, alpha 1

Details for - - actinin, alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109711

Tuberculist Genomic Region

12046 B cell leukemia/lymphoma 2 related protein A1c

Details for - - B cell leukemia/lymphoma 2 related protein A1c

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12046

Tuberculist Genomic Region

16172 interleukin 17 receptor A

Details for - - interleukin 17 receptor A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16172

Tuberculist Genomic Region

18788 serine (or cysteine) peptidase inhibitor, clade B, member 2

Details for - - serine (or cysteine) peptidase inhibitor, clade B, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18788

Tuberculist Genomic Region

20238 ataxin 1

Details for - - ataxin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20238

Tuberculist Genomic Region

20375 spleen focus forming virus (SFFV) proviral integration oncogene

Details for RP23-20F9.1 - spleen focus forming virus (SFFV) proviral integration oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20375

Tuberculist Genomic Region

20893 basic helix-loop-helix family, member e40

Details for - - basic helix-loop-helix family, member e40

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20893

Tuberculist Genomic Region

223435 triple functional domain (PTPRF interacting)

Details for - - triple functional domain (PTPRF interacting)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223435

Tuberculist Genomic Region

52712 zinc finger with KRAB and SCAN domains 6

Details for RP23-215H18.1 - zinc finger with KRAB and SCAN domains 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52712

Tuberculist Genomic Region

52857 GRAM domain containing 1A

Details for - - GRAM domain containing 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52857

Tuberculist Genomic Region

54446 nuclear factor of activated T cells 5

Details for - - nuclear factor of activated T cells 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54446

Tuberculist Genomic Region

68166 spire homolog 1 (Drosophila)

Details for - - spire homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68166

Tuberculist Genomic Region

80719 immunoglobulin superfamily, member 6

Details for - - immunoglobulin superfamily, member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80719

Tuberculist Genomic Region

100040260 predicted pseudogene 1862

Details for - - predicted pseudogene 1862

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100040260

Tuberculist Genomic Region

104215 ras homolog gene family, member Q

Details for - - ras homolog gene family, member Q

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104215

Tuberculist Genomic Region

105722 anoctamin 6

Details for - - anoctamin 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105722

Tuberculist Genomic Region

13653 early growth response 1

Details for - - early growth response 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13653

Tuberculist Genomic Region

16410 integrin alpha V

Details for RP23-111F12.3 - integrin alpha V

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16410

Tuberculist Genomic Region

16798 large tumor suppressor

Details for - - large tumor suppressor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16798

Tuberculist Genomic Region

18590 platelet derived growth factor, alpha

Details for - - platelet derived growth factor, alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18590

Tuberculist Genomic Region

20525 solute carrier family 2 (facilitated glucose transporter), member 1

Details for RP23-344D2.2 - solute carrier family 2 (facilitated glucose transporter), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20525

Tuberculist Genomic Region

226691 expressed sequence AI607873

Details for - - expressed sequence AI607873

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226691

Tuberculist Genomic Region

233489 phosphatidylinositol binding clathrin assembly protein

Details for - - phosphatidylinositol binding clathrin assembly protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233489

Tuberculist Genomic Region

26374 ring finger and WD repeat domain 2

Details for mCG_124354 - ring finger and WD repeat domain 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26374

Tuberculist Genomic Region

52348 vacuolar protein sorting 37A (yeast)

Details for - - vacuolar protein sorting 37A (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52348

Tuberculist Genomic Region

544752 taurine upregulated gene 1

Details for - - taurine upregulated gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 544752

Tuberculist Genomic Region

56228 ubiquitin-conjugating enzyme E2J 1

Details for RP23-12I24.8 - ubiquitin-conjugating enzyme E2J 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56228

Tuberculist Genomic Region

56619 C-type lectin domain family 4, member e

Details for - - C-type lectin domain family 4, member e

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56619

Tuberculist Genomic Region

622976 predicted gene 6377

Details for RP23-252O5.3 - predicted gene 6377

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 622976

Tuberculist Genomic Region

67149 Na+/K+ transporting ATPase interacting 1

Details for - - Na+/K+ transporting ATPase interacting 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67149

Tuberculist Genomic Region

68473 MOB kinase activator 1B

Details for - - MOB kinase activator 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68473

Tuberculist Genomic Region

71436 fibronectin leucine rich transmembrane protein 3

Details for RP23-388J20.1 - fibronectin leucine rich transmembrane protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71436

Tuberculist Genomic Region

74277 cysteine-rich hydrophobic domain 2

Details for - - cysteine-rich hydrophobic domain 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74277

Tuberculist Genomic Region

15945 chemokine (C-X-C motif) ligand 10

Details for - - chemokine (C-X-C motif) ligand 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15945

Tuberculist Genomic Region

105559 muscleblind-like 2

Details for - - muscleblind-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105559

Tuberculist Genomic Region

15957 interferon-induced protein with tetratricopeptide repeats 1

Details for - - interferon-induced protein with tetratricopeptide repeats 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15957

Tuberculist Genomic Region

16449 jagged 1

Details for RP23-173O12.3 - jagged 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16449

Tuberculist Genomic Region

100434 solute carrier family 44, member 1

Details for RP23-20E10.4 - solute carrier family 44, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100434

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
PLAG1_MA0163.1 0.756757 0.0000116

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000000013 AAWRAAAA NA 0.000000064 GAGGAGGAGSC V$FPM315_01_M01587

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.07 GCGCGN V$ZFP161_04_M02933, Zfp161.2, E2F2.1, E2F3.1, Zfp161.1 1.32 CGCGCNCG V$ZF5_01_M00716, Zfp161.1

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.61 TAAATACT NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-19b, mmu-miR-19a 0.787879 0.000000016

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-369-3p 0.5 0.00000012

Add comment

Log in or register to post comments