PITA_98 megaCluster: 11 Residual: 0.14

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_98 11 0.14 15 0 0.968196 0

Members

Displaying 1 - 34 of 34
13191 solute carrier family 33 (acetyl-CoA transporter), member 1

Details for - - solute carrier family 33 (acetyl-CoA transporter), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11416

Tuberculist Genomic Region

14583 dynactin 1

Details for - - dynactin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13191

Tuberculist Genomic Region

17181 glutamine fructose-6-phosphate transaminase 1

Details for - - glutamine fructose-6-phosphate transaminase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14583

Tuberculist Genomic Region

20409 matrilin 2

Details for - - matrilin 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17181

Tuberculist Genomic Region

20916 osteoclast stimulating factor 1

Details for - - osteoclast stimulating factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20409

Tuberculist Genomic Region

227753 succinate-Coenzyme A ligase, ADP-forming, beta subunit

Details for - - succinate-Coenzyme A ligase, ADP-forming, beta subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20916

Tuberculist Genomic Region

26399 gelsolin

Details for RP23-186B18.2 - gelsolin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227753

Tuberculist Genomic Region

317717 mitogen-activated protein kinase kinase 6

Details for RP23-162E10.1 - mitogen-activated protein kinase kinase 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26399

Tuberculist Genomic Region

433771 SEC22 vesicle trafficking protein homolog A (S. cerevisiae)

Details for - - SEC22 vesicle trafficking protein homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 317717

Tuberculist Genomic Region

56529 mitochondrial inner membrane organizing system 1

Details for RP23-65B16.4 - mitochondrial inner membrane organizing system 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 433771

Tuberculist Genomic Region

58230 SEC11 homolog A (S. cerevisiae)

Details for - - SEC11 homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56529

Tuberculist Genomic Region

66231 ring finger protein 8

Details for - - ring finger protein 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58230

Tuberculist Genomic Region

66526 THO complex 7 homolog (Drosophila)

Details for - - THO complex 7 homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66231

Tuberculist Genomic Region

66861 transcription elongation factor A (SII) N-terminal and central domain containing 2

Details for - - transcription elongation factor A (SII) N-terminal and central domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66526

Tuberculist Genomic Region

66983 DnaJ (Hsp40) homolog, subfamily C, member 10

Details for RP23-282M14.2 - DnaJ (Hsp40) homolog, subfamily C, member 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66861

Tuberculist Genomic Region

76936 zinc finger protein 830

Details for RP23-316C11.5 - zinc finger protein 830

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66983

Tuberculist Genomic Region

93675 heterogeneous nuclear ribonucleoprotein M

Details for RP24-225N8.1 - heterogeneous nuclear ribonucleoprotein M

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76936

Tuberculist Genomic Region

19769 C-type lectin domain family 2, member i

Details for - - C-type lectin domain family 2, member i

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 93675

Tuberculist Genomic Region

21881 Ras-like without CAAX 1

Details for - - Ras-like without CAAX 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19769

Tuberculist Genomic Region

53945 transketolase

Details for - - transketolase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21881

Tuberculist Genomic Region

67864 solute carrier family 40 (iron-regulated transporter), member 1

Details for - - solute carrier family 40 (iron-regulated transporter), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53945

Tuberculist Genomic Region

72931 Yip1 domain family, member 4

Details for - - Yip1 domain family, member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67864

Tuberculist Genomic Region

98985 SWI5 recombination repair homolog (yeast)

Details for RP23-161B9.6 - SWI5 recombination repair homolog (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72931

Tuberculist Genomic Region

17992 CLP1, cleavage and polyadenylation factor I subunit

Details for RP23-399J8.1 - CLP1, cleavage and polyadenylation factor I subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98985

Tuberculist Genomic Region

213742 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17992

Tuberculist Genomic Region

53381 inactive X specific transcripts

Details for - - inactive X specific transcripts

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213742

Tuberculist Genomic Region

67707 peroxiredoxin 4

Details for RP23-395K13.3 - peroxiredoxin 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53381

Tuberculist Genomic Region

68832 mitochondrial ribosomal protein L24

Details for - - mitochondrial ribosomal protein L24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67707

Tuberculist Genomic Region

69163 RIKEN cDNA 1110057K04 gene

Details for - - RIKEN cDNA 1110057K04 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68832

Tuberculist Genomic Region

67151 mitochondrial ribosomal protein L44

Details for - - mitochondrial ribosomal protein L44

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69163

Tuberculist Genomic Region

68603 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9

Details for - - proteasome (prosome, macropain) 26S subunit, non-ATPase, 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67151

Tuberculist Genomic Region

70536 phosphomevalonate kinase

Details for - - phosphomevalonate kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68603

Tuberculist Genomic Region

71881 glutaminyl-peptide cyclotransferase (glutaminyl cyclase)

Details for - - glutaminyl-peptide cyclotransferase (glutaminyl cyclase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70536

Tuberculist Genomic Region

Details for RP23-156P22.2 - adipocyte plasma membrane associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71881

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000000055 TTTTTTTTTNTT NA 25 GCGCASGCGCA V$ZFP206_01_M01742, V$NRF1_Q6_M00652, NRF1_NRF_full_dimeric_12_1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.15 CGCGTC NA 1.21 CGAAGCGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.4 GTGNGC NA NA 0.49 GAGTTCTN NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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