TargetScan_111 megaCluster: 11 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_111 11 0.21 15 0 0.916252 0

Members

Displaying 1 - 30 of 30
14339 thymoma viral proto-oncogene 1 interacting protein

Details for - - thymoma viral proto-oncogene 1 interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14339

Tuberculist Genomic Region

14957 histone cluster 1, H1d

Details for mCG_50184 - histone cluster 1, H1d

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14957

Tuberculist Genomic Region

56350 ADP-ribosylation factor-like 3

Details for - - ADP-ribosylation factor-like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56350

Tuberculist Genomic Region

56743 linker for activation of T cells family, member 2

Details for - - linker for activation of T cells family, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56743

Tuberculist Genomic Region

66349 ATP5S-like

Details for - - ATP5S-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66349

Tuberculist Genomic Region

67755 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47

Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67755

Tuberculist Genomic Region

68047 MPN domain containing

Details for RP23-65P17.2 - MPN domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68047

Tuberculist Genomic Region

72154 zinc finger protein 157

Details for - - zinc finger protein 157

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72154

Tuberculist Genomic Region

72634 tudor and KH domain containing protein

Details for - - tudor and KH domain containing protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72634

Tuberculist Genomic Region

73739 chibby homolog 1 (Drosophila)

Details for - - chibby homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73739

Tuberculist Genomic Region

73873 family with sequence similarity 161, member A

Details for RP23-160F12.1 - family with sequence similarity 161, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73873

Tuberculist Genomic Region

78752 chondroitin sulfate N-acetylgalactosaminyltransferase 2

Details for - - chondroitin sulfate N-acetylgalactosaminyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78752

Tuberculist Genomic Region

12412 chromobox 1

Details for RP23-353J21.1 - chromobox 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12412

Tuberculist Genomic Region

12757 clathrin, light polypeptide (Lca)

Details for RP23-209M8.4 - clathrin, light polypeptide (Lca)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12757

Tuberculist Genomic Region

140500 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3

Details for RP23-242K15.11-002 - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140500

Tuberculist Genomic Region

14426 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4

Details for - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14426

Tuberculist Genomic Region

19182 proteasome (prosome, macropain) 26S subunit, ATPase 3

Details for RP23-263H8.1 - proteasome (prosome, macropain) 26S subunit, ATPase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19182

Tuberculist Genomic Region

20405 SH3-domain GRB2-like 1

Details for - - SH3-domain GRB2-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20405

Tuberculist Genomic Region

22183 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1

Details for RP23-242C19.4 - zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22183

Tuberculist Genomic Region

226151 family with sequence similarity 178, member A

Details for - - family with sequence similarity 178, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226151

Tuberculist Genomic Region

381280 Holliday junction recognition protein

Details for - - Holliday junction recognition protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381280

Tuberculist Genomic Region

56335 methyltransferase like 3

Details for - - methyltransferase like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56335

Tuberculist Genomic Region

67492 zinc finger, AN1-type domain 4

Details for - - zinc finger, AN1-type domain 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67492

Tuberculist Genomic Region

71735 leucine-rich repeats and WD repeat domain containing 1

Details for - - leucine-rich repeats and WD repeat domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71735

Tuberculist Genomic Region

72421 tetratricopeptide repeat domain 30B

Details for RP23-159H12.4 - tetratricopeptide repeat domain 30B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72421

Tuberculist Genomic Region

74360 centrosomal protein 57

Details for RP23-133A3.3 - centrosomal protein 57

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74360

Tuberculist Genomic Region

80283 ankyrin repeat and BTB (POZ) domain containing 1

Details for - - ankyrin repeat and BTB (POZ) domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80283

Tuberculist Genomic Region

85308 ER membrane protein complex subunit 9

Details for - - ER membrane protein complex subunit 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 85308

Tuberculist Genomic Region

94223 DiGeorge syndrome critical region gene 8

Details for - - DiGeorge syndrome critical region gene 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94223

Tuberculist Genomic Region

56794 2-hydroxyacyl-CoA lyase 1

Details for - - 2-hydroxyacyl-CoA lyase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56794

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_NFY_C_M00209 0.333333 0.0000231

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0066 AAAAANAAAAMA NA 340000 ANTRTTTRAAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.28 ATCGCG NA 1.39 GNACGCCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.67 CAANGGTG NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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