TargetScan_152 megaCluster: 8 Residual: 0.26

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_152 8 0.26 11 0 0.803871 0.008

Members

Displaying 1 - 24 of 24
103573 exportin 1, CRM1 homolog (yeast)

Details for RP23-305E10.1 - exportin 1, CRM1 homolog (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103573

Tuberculist Genomic Region

11363 acyl-Coenzyme A dehydrogenase, long-chain

Details for AC124389.2 - acyl-Coenzyme A dehydrogenase, long-chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11363

Tuberculist Genomic Region

215201 TRM2 tRNA methyltransferase 2B

Details for RP23-162B19.2 - TRM2 tRNA methyltransferase 2B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215201

Tuberculist Genomic Region

56187 Rab geranylgeranyl transferase, a subunit

Details for - - Rab geranylgeranyl transferase, a subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56187

Tuberculist Genomic Region

68428 STEAP family member 3

Details for - - STEAP family member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68428

Tuberculist Genomic Region

77022 NDC80 homolog, kinetochore complex component pseudogene

Details for - - NDC80 homolog, kinetochore complex component pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77022

Tuberculist Genomic Region

15201 helicase, lymphoid specific

Details for - - helicase, lymphoid specific

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15201

Tuberculist Genomic Region

15473 heat-responsive protein 12

Details for - - heat-responsive protein 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15473

Tuberculist Genomic Region

16443 intersectin 1 (SH3 domain protein 1A)

Details for - - intersectin 1 (SH3 domain protein 1A)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16443

Tuberculist Genomic Region

17215 minichromosome maintenance deficient 3 (S. cerevisiae)

Details for - - minichromosome maintenance deficient 3 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17215

Tuberculist Genomic Region

20359 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B

Details for - - sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20359

Tuberculist Genomic Region

211651 Fanconi anemia, complementation group D2

Details for - - Fanconi anemia, complementation group D2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211651

Tuberculist Genomic Region

215243 TRAF3 interacting protein 3

Details for RP23-282D4.1 - TRAF3 interacting protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 215243

Tuberculist Genomic Region

216443 methionine-tRNA synthetase

Details for - - methionine-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216443

Tuberculist Genomic Region

218885 oxidoreductase NAD-binding domain containing 1

Details for - - oxidoreductase NAD-binding domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218885

Tuberculist Genomic Region

223433 family with sequence similarity 105, member A

Details for - - family with sequence similarity 105, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223433

Tuberculist Genomic Region

227154 STE20-related kinase adaptor beta

Details for - - STE20-related kinase adaptor beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227154

Tuberculist Genomic Region

26886 centromere protein H

Details for - - centromere protein H

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26886

Tuberculist Genomic Region

26951 zw10 kinetochore protein

Details for - - zw10 kinetochore protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26951

Tuberculist Genomic Region

381318 NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)

Details for - - NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381318

Tuberculist Genomic Region

66904 propionyl Coenzyme A carboxylase, beta polypeptide

Details for - - propionyl Coenzyme A carboxylase, beta polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66904

Tuberculist Genomic Region

791088 RIKEN cDNA C630016N16 gene

Details for - - RIKEN cDNA C630016N16 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 791088

Tuberculist Genomic Region

98415 nuclear casein kinase and cyclin-dependent kinase substrate 1

Details for - - nuclear casein kinase and cyclin-dependent kinase substrate 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98415

Tuberculist Genomic Region

70218 kinesin family member 18B

Details for RP23-463E7.6 - kinesin family member 18B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70218

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
POU3F3_POU_DBD_dimeric_12_1 0.227273 0.000000342

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
2.2 TAAGNARAAAA NA 70000 AACTGTAGTTTG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.19 TGGCGG V$SMAD4_04_M02898, Smad3.1 1.36 CGGCGNTT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.65 TACTTG NA NA 0.89 TNNTACTT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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