TargetScan_165 megaCluster: 8 Residual: 0.19

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_165 8 0.19 15 0 0.931665 0

Members

Displaying 1 - 31 of 31
14228 FK506 binding protein 4

Details for - - FK506 binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14228

Tuberculist Genomic Region

17268 Meis homeobox 1

Details for RP23-377H12.3 - Meis homeobox 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17268

Tuberculist Genomic Region

26904 SH2 domain protein 1B1

Details for - - SH2 domain protein 1B1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26904

Tuberculist Genomic Region

65099 interleukin-1 receptor-associated kinase 1 binding protein 1

Details for - - interleukin-1 receptor-associated kinase 1 binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65099

Tuberculist Genomic Region

66385 protein phosphatase 1, regulatory (inhibitor) subunit 7

Details for - - protein phosphatase 1, regulatory (inhibitor) subunit 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66385

Tuberculist Genomic Region

74610 ATP-binding cassette, sub-family B (MDR/TAP), member 8

Details for - - ATP-binding cassette, sub-family B (MDR/TAP), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74610

Tuberculist Genomic Region

108853 mitochondrial translational release factor 1-like

Details for - - mitochondrial translational release factor 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108853

Tuberculist Genomic Region

17252 retinol dehydrogenase 11

Details for - - retinol dehydrogenase 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17252

Tuberculist Genomic Region

17347 MAP kinase-interacting serine/threonine kinase 2

Details for - - MAP kinase-interacting serine/threonine kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17347

Tuberculist Genomic Region

216156 WD repeat domain 18

Details for - - WD repeat domain 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216156

Tuberculist Genomic Region

216445 Rho GTPase activating protein 9

Details for - - Rho GTPase activating protein 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216445

Tuberculist Genomic Region

216805 folliculin

Details for RP23-180B18.1 - folliculin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216805

Tuberculist Genomic Region

217304 CD300 antigen like family member B

Details for - - CD300 antigen like family member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217304

Tuberculist Genomic Region

229285 spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)

Details for - - spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229285

Tuberculist Genomic Region

26889 ceroid-lipofuscinosis, neuronal 8

Details for - - ceroid-lipofuscinosis, neuronal 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26889

Tuberculist Genomic Region

27267 cysteinyl-tRNA synthetase

Details for - - cysteinyl-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27267

Tuberculist Genomic Region

320197 RIKEN cDNA D830046C22 gene

Details for - - RIKEN cDNA D830046C22 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320197

Tuberculist Genomic Region

56357 isovaleryl coenzyme A dehydrogenase

Details for RP23-172B16.1 - isovaleryl coenzyme A dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56357

Tuberculist Genomic Region

56401 leprecan 1

Details for RP23-344D2.11-004 - leprecan 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56401

Tuberculist Genomic Region

56742 proline/serine-rich coiled-coil 1

Details for RP23-27B23.8 - proline/serine-rich coiled-coil 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56742

Tuberculist Genomic Region

66559 methionyl aminopeptidase type 1D (mitochondrial)

Details for RP23-419H3.1 - methionyl aminopeptidase type 1D (mitochondrial)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66559

Tuberculist Genomic Region

66863 leucine-zipper-like transcriptional regulator, 1

Details for - - leucine-zipper-like transcriptional regulator, 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66863

Tuberculist Genomic Region

67150 ring finger protein 141

Details for - - ring finger protein 141

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67150

Tuberculist Genomic Region

67936 WD repeat domain 55

Details for - - WD repeat domain 55

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67936

Tuberculist Genomic Region

72154 zinc finger protein 157

Details for - - zinc finger protein 157

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72154

Tuberculist Genomic Region

78752 chondroitin sulfate N-acetylgalactosaminyltransferase 2

Details for - - chondroitin sulfate N-acetylgalactosaminyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78752

Tuberculist Genomic Region

80743 vacuolar protein sorting 16 (yeast)

Details for RP23-29K12.8 - vacuolar protein sorting 16 (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80743

Tuberculist Genomic Region

98193 DDB1 and CUL4 associated factor 8

Details for - - DDB1 and CUL4 associated factor 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98193

Tuberculist Genomic Region

73694 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73694

Tuberculist Genomic Region

66841 electron transferring flavoprotein, dehydrogenase

Details for - - electron transferring flavoprotein, dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66841

Tuberculist Genomic Region

234865 nucleoporin 133

Details for - - nucleoporin 133

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234865

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
ZBTB49_C2H2_DBD_monomeric_17_1 0.333333 0.0000136

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000045 AAACAAACAAAA FOXI1_MA0042.1, Foxd3_MA0041.1, V$HFH4_01_M00742, V$HNF3G_Q4_M02015, V$FOX_Q2_M00809 9700 AATACTTTCCA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.12 CGCGAG NA 1.45 TCGCGCTT NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.55 GCCGAC NA NA 0.7 GCCMNACA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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