TargetScan_47 megaCluster: 11 Residual: 0.20

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_47 11 0.20 15 0 0.923827 0

Members

Displaying 1 - 34 of 34
103268 centrosomal protein 57-like 1

Details for - - centrosomal protein 57-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103268

Tuberculist Genomic Region

108689 oligonucleotide/oligosaccharide-binding fold containing 1

Details for - - oligonucleotide/oligosaccharide-binding fold containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108689

Tuberculist Genomic Region

114714 RAD51 homolog C

Details for RP23-209O5.3 - RAD51 homolog C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114714

Tuberculist Genomic Region

18082 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)

Details for RP23-64E17.1 - 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18082

Tuberculist Genomic Region

18639 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1

Details for RP23-338A17.2 - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18639

Tuberculist Genomic Region

192169 UFM1-specific peptidase 2

Details for - - UFM1-specific peptidase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 192169

Tuberculist Genomic Region

19891 replication protein A2

Details for RP23-442A20.4 - replication protein A2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19891

Tuberculist Genomic Region

230145 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12

Details for RP23-337N2.6 - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230145

Tuberculist Genomic Region

23834 cell division cycle 6

Details for RP23-333D2.2 - cell division cycle 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23834

Tuberculist Genomic Region

269224 PAS domain containing serine/threonine kinase

Details for - - PAS domain containing serine/threonine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269224

Tuberculist Genomic Region

57344 arsenic (+3 oxidation state) methyltransferase

Details for - - arsenic (+3 oxidation state) methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57344

Tuberculist Genomic Region

66177 ubiquitin-like 5

Details for - - ubiquitin-like 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66177

Tuberculist Genomic Region

66194 pyrroline-5-carboxylate reductase-like

Details for - - pyrroline-5-carboxylate reductase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66194

Tuberculist Genomic Region

66368 RNA 3'-terminal phosphate cyclase

Details for - - RNA 3'-terminal phosphate cyclase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66368

Tuberculist Genomic Region

67381 mediator complex subunit 4

Details for - - mediator complex subunit 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67381

Tuberculist Genomic Region

67773 K(lysine) acetyltransferase 8

Details for - - K(lysine) acetyltransferase 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67773

Tuberculist Genomic Region

71743 Coenzyme A synthase

Details for RP23-440M18.3 - Coenzyme A synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71743

Tuberculist Genomic Region

77605 H2A histone family, member V

Details for RP23-74L9.1 - H2A histone family, member V

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77605

Tuberculist Genomic Region

78372 small nuclear ribonucleoprotein 25 (U11/U12)

Details for RP23-177M10.3 - small nuclear ribonucleoprotein 25 (U11/U12)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78372

Tuberculist Genomic Region

78412 RIKEN cDNA 3110062M04 gene

Details for - - RIKEN cDNA 3110062M04 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78412

Tuberculist Genomic Region

78903 Werner helicase interacting protein 1

Details for RP23-427P14.3 - Werner helicase interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78903

Tuberculist Genomic Region

109079 selenophosphate synthetase 1

Details for RP23-198G1.3 - selenophosphate synthetase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109079

Tuberculist Genomic Region

12721 coronin, actin binding protein 1A

Details for - - coronin, actin binding protein 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12721

Tuberculist Genomic Region

18971 polymerase (DNA directed), delta 1, catalytic subunit

Details for - - polymerase (DNA directed), delta 1, catalytic subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18971

Tuberculist Genomic Region

19718 replication factor C (activator 1) 2

Details for - - replication factor C (activator 1) 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19718

Tuberculist Genomic Region

225745 HAUS augmin-like complex, subunit 1

Details for - - HAUS augmin-like complex, subunit 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225745

Tuberculist Genomic Region

59001 polymerase (DNA directed), epsilon 3 (p17 subunit)

Details for RP24-189G18.8 - polymerase (DNA directed), epsilon 3 (p17 subunit)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 59001

Tuberculist Genomic Region

60364 downstream neighbor of SON

Details for - - downstream neighbor of SON

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60364

Tuberculist Genomic Region

66131 timeless interacting protein

Details for - - timeless interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66131

Tuberculist Genomic Region

68275 replication protein A1

Details for RP23-113D4.1 - replication protein A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68275

Tuberculist Genomic Region

72103 aprataxin and PNKP like factor

Details for - - aprataxin and PNKP like factor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72103

Tuberculist Genomic Region

14156 flap structure specific endonuclease 1

Details for - - flap structure specific endonuclease 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14156

Tuberculist Genomic Region

56424 STIP1 homology and U-Box containing protein 1

Details for - - STIP1 homology and U-Box containing protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56424

Tuberculist Genomic Region

67015 coiled-coil domain containing 91

Details for RP23-298K1.1 - coiled-coil domain containing 91

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67015

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_OCT1_Q6_M00195 0.235294 0.0000132

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000007 AAAAAACAAANN Foxd3_MA0041.1, Zfp105.1 0.048 TCYTTTTCCTTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.37 ACGCCG NA 1.34 TCTCGCGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.48 CGCGGA NA NA 0.63 CNCTNGAC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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