TargetScan_59 megaCluster: 11 Residual: 0.21 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_59	11	0.21	15	0	0.91285	0

Members

Displaying 1 - 30 of 30

107995 cell division cycle 20 Details for RP23-145E1.5 - cell division cycle 20 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107995 Tuberculist Genomic Region	110854 protein phosphatase 2A activator, regulatory subunit B Details for RP23-399D3.1 - protein phosphatase 2A activator, regulatory subunit B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110854 Tuberculist Genomic Region
11881 arylsulfatase B Details for - - arylsulfatase B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11881 Tuberculist Genomic Region	12585 cerebellar degeneration-related 2 Details for - - cerebellar degeneration-related 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12585 Tuberculist Genomic Region
13018 CCCTC-binding factor Details for - - CCCTC-binding factor GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13018 Tuberculist Genomic Region	14194 fumarate hydratase 1 Details for - - fumarate hydratase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14194 Tuberculist Genomic Region
20250 stearoyl-Coenzyme A desaturase 2 Details for - - stearoyl-Coenzyme A desaturase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20250 Tuberculist Genomic Region	20280 sterol carrier protein 2, liver Details for RP23-84A23.1 - sterol carrier protein 2, liver GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20280 Tuberculist Genomic Region
20778 scavenger receptor class B, member 1 Details for - - scavenger receptor class B, member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20778 Tuberculist Genomic Region	22247 uridine monophosphate synthetase Details for - - uridine monophosphate synthetase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22247 Tuberculist Genomic Region
233987 zinc finger protein 958 Details for - - zinc finger protein 958 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 233987 Tuberculist Genomic Region	23938 mitogen-activated protein kinase kinase 5 Details for - - mitogen-activated protein kinase kinase 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 23938 Tuberculist Genomic Region
270198 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 Details for - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 270198 Tuberculist Genomic Region	50773 5',3'-nucleotidase, cytosolic Details for RP23-392H19.7 - 5',3'-nucleotidase, cytosolic GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 50773 Tuberculist Genomic Region
67849 cell division cycle associated 5 Details for - - cell division cycle associated 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67849 Tuberculist Genomic Region	67959 poly-U binding splicing factor 60 Details for - - poly-U binding splicing factor 60 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67959 Tuberculist Genomic Region
68585 reticulon 4 Details for RP23-176O5.4 - reticulon 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68585 Tuberculist Genomic Region	70257 RIKEN cDNA 2010107E04 gene Details for - - RIKEN cDNA 2010107E04 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70257 Tuberculist Genomic Region
70652 transmembrane protein 144 Details for - - transmembrane protein 144 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70652 Tuberculist Genomic Region	73451 zinc finger protein 763 Details for - - zinc finger protein 763 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73451 Tuberculist Genomic Region
74326 heterogeneous nuclear ribonucleoprotein R Details for RP24-315O23.1 - heterogeneous nuclear ribonucleoprotein R GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74326 Tuberculist Genomic Region	78935 serum amyloid A-like 1 Details for - - serum amyloid A-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 78935 Tuberculist Genomic Region
80986 cytoskeleton associated protein 2 Details for - - cytoskeleton associated protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80986 Tuberculist Genomic Region	11799 baculoviral IAP repeat-containing 5 Details for RP23-268N22.2 - baculoviral IAP repeat-containing 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11799 Tuberculist Genomic Region
210789 TBC1 domain family, member 4 Details for - - TBC1 domain family, member 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 210789 Tuberculist Genomic Region	21877 thymidine kinase 1 Details for RP23-151N19.8 - thymidine kinase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21877 Tuberculist Genomic Region
66586 cardiolipin synthase 1 Details for RP23-77H16.4 - cardiolipin synthase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66586 Tuberculist Genomic Region	68002 RIKEN cDNA 1110058L19 gene Details for - - RIKEN cDNA 1110058L19 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68002 Tuberculist Genomic Region
110033 kinesin family member 22 Details for - - kinesin family member 22 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 110033 Tuberculist Genomic Region	224171 RIKEN cDNA C330027C09 gene Details for - - RIKEN cDNA C330027C09 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 224171 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_GATA1_02_M00126	0.233333	0.0000136

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.0000033	AAAANMAAAAA	NA	24	GCCCCGCCCCN	Klf4_MA0039.2, SP1_MA0079.2, SP1_MA0079.1, V$SP1_Q6_01_M00931, V$SP1_Q6_M00196, V$SP4_Q5_M01273, V$SP1_Q4_01_M00932, V$SP1_Q2_01_M00933, V$GC_01_M00255, V$SP1_02_M01303, V$KLF7_03_M02773, V$SP2_01_M01783, V$GKLF_02_M01588, V$SMAD4_04_M02898, V$MAZR_01_M00491, V$SP1_03_M02281, V$CKROX_Q2_M01175, V$BCL6B_04_M02844, V$SP1_01_M00008, V$ZFP281_01_M01597, V$UF1H3BETA_Q6_M01068, V$E2F3_Q6_M02089, V$SP4_03_M02810, V$MAZ_Q6_01_M02023, V$MAZ_Q6_M00649, V$ETF_Q6_M00695, V$ZFP410_04_M02936, V$ZBP89_Q4_M01816, V$ZFP281_04_M02831, V$EGR1_Q6_M01873, V$EGR1_06_M02744, V$SP4_04_M02914, V$ZFP740_03_M02834, V$KLF15_Q2_M01714, V$KROX_Q6_M00982, V$CACD_01_M01113, V$SP1SP3_Q4_M01219, V$ZNF219_01_M01122, V$FKLF_Q5_M01837, V$CACBINDINGPROTEIN_Q6_M00720, Klf7.1, Smad3.1, Bcl6b.2, Sp4.1, Zfp410.1, Zfp281.2, Egr1.1, Zfp740.1, Sp4.2, Ascl2.2, SP1_C2H2_DBD_monomeric_11_1, KLF16_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1, KLF14_C2H2_DBD_monomeric_14_1, KLF13_C2H2_full_monomeric_18_1, SP4_C2H2_full_monomeric_17_1, SP8_C2H2_DBD_monomeric_12_1, Klf12_C2H2_DBD_monomeric_15_1, ZNF740_C2H2_full_monomeric_10_1, Zfp740_C2H2_DBD_monomeric_10_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.13	TCGGCG	NA	1.44	TCGCGCGA	V$E2F1_Q3_01_M00938, V$E2F_03_M00516, V$E2F_Q6_01_M00920, V$E2F_Q4_01_M00919, V$E2F_01_M00024, V$ZF5_01_M00716, V$E2F2_03_M02742, E2F2.1

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.58	AACGCG	NA	NA	0.7	AGNGNGAG	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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