TargetScan_6 megaCluster: 1 Residual: 0.26

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_6 1 0.26 14 0 0.838224 0

Members

Displaying 1 - 38 of 38
100038602 predicted gene 10865

Details for - - predicted gene 10865

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100038602

Tuberculist Genomic Region

100041555 ribosomal protein L10, pseudogene 5

Details for - - ribosomal protein L10, pseudogene 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100041555

Tuberculist Genomic Region

100216537 small nucleolar RNA, C/D box 104

Details for - - small nucleolar RNA, C/D box 104

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100216537

Tuberculist Genomic Region

100217414 small Cajal body-specific RNA 3A

Details for - - small Cajal body-specific RNA 3A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100217414

Tuberculist Genomic Region

100313519 small nucleolar RNA, C/D box 17

Details for - - small nucleolar RNA, C/D box 17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100313519

Tuberculist Genomic Region

100504727 expressed sequence BE692007

Details for - - expressed sequence BE692007

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504727

Tuberculist Genomic Region

104252 CDC42 effector protein (Rho GTPase binding) 2

Details for - - CDC42 effector protein (Rho GTPase binding) 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104252

Tuberculist Genomic Region

14064 coagulation factor II (thrombin) receptor-like 2

Details for - - coagulation factor II (thrombin) receptor-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14064

Tuberculist Genomic Region

213053 solute carrier family 39 (zinc transporter), member 14

Details for - - solute carrier family 39 (zinc transporter), member 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213053

Tuberculist Genomic Region

22323 vasodilator-stimulated phosphoprotein

Details for - - vasodilator-stimulated phosphoprotein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22323

Tuberculist Genomic Region

240672 dual specificity phosphatase 5

Details for - - dual specificity phosphatase 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240672

Tuberculist Genomic Region

244668 signal-induced proliferation-associated 1 like 2

Details for - - signal-induced proliferation-associated 1 like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244668

Tuberculist Genomic Region

269941 chondroitin sulfate synthase 1

Details for - - chondroitin sulfate synthase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269941

Tuberculist Genomic Region

320189 RIKEN cDNA 9430076C15 gene

Details for - - RIKEN cDNA 9430076C15 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320189

Tuberculist Genomic Region

320878 microtubule associated monooxygenase, calponin and LIM domain containing 2

Details for - - microtubule associated monooxygenase, calponin and LIM domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320878

Tuberculist Genomic Region

382551 CD300 antigen like family member H

Details for RP23-331L12.8 - CD300 antigen like family member H

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382551

Tuberculist Genomic Region

433926 leucine rich repeat containing 8 family, member B

Details for - - leucine rich repeat containing 8 family, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 433926

Tuberculist Genomic Region

58217 triggering receptor expressed on myeloid cells 1

Details for - - triggering receptor expressed on myeloid cells 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58217

Tuberculist Genomic Region

628596 eukaryotic translation initiation factor 1 pseudogene

Details for - - eukaryotic translation initiation factor 1 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 628596

Tuberculist Genomic Region

635504 predicted gene 7160

Details for - - predicted gene 7160

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 635504

Tuberculist Genomic Region

66205 CD302 antigen

Details for RP23-10L17.2 - CD302 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66205

Tuberculist Genomic Region

66597 tripartite motif-containing 13

Details for - - tripartite motif-containing 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66597

Tuberculist Genomic Region

71701 polyribonucleotide nucleotidyltransferase 1

Details for RP23-313I4.2 - polyribonucleotide nucleotidyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71701

Tuberculist Genomic Region

71973 RNA binding protein with multiple splicing 2

Details for - - RNA binding protein with multiple splicing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71973

Tuberculist Genomic Region

73158 La ribonucleoprotein domain family, member 1

Details for RP23-293I3.7 - La ribonucleoprotein domain family, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73158

Tuberculist Genomic Region

74030 Ras and Rab interactor 2

Details for RP23-125A1.3 - Ras and Rab interactor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74030

Tuberculist Genomic Region

74427 ELL associated factor 1

Details for - - ELL associated factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74427

Tuberculist Genomic Region

76650 sulfiredoxin 1 homolog (S. cerevisiae)

Details for - - sulfiredoxin 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76650

Tuberculist Genomic Region

76800 ubiquitin specific peptidase 42

Details for - - ubiquitin specific peptidase 42

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76800

Tuberculist Genomic Region

77633 G1 to S phase transition pseudogene

Details for - - G1 to S phase transition pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77633

Tuberculist Genomic Region

11796 baculoviral IAP repeat-containing 3

Details for RP24-318P17.1 - baculoviral IAP repeat-containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11796

Tuberculist Genomic Region

16648 karyopherin (importin) alpha 3

Details for - - karyopherin (importin) alpha 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16648

Tuberculist Genomic Region

21929 tumor necrosis factor, alpha-induced protein 3

Details for - - tumor necrosis factor, alpha-induced protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21929

Tuberculist Genomic Region

241447 ceramide synthase 6

Details for RP23-431D4.1 - ceramide synthase 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241447

Tuberculist Genomic Region

380916 leucine-rich repeats and calponin homology (CH) domain containing 1

Details for - - leucine-rich repeats and calponin homology (CH) domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 380916

Tuberculist Genomic Region

56715 RAB guanine nucleotide exchange factor (GEF) 1

Details for - - RAB guanine nucleotide exchange factor (GEF) 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56715

Tuberculist Genomic Region

75379 RIKEN cDNA 4930599N23 gene

Details for - - RIKEN cDNA 4930599N23 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75379

Tuberculist Genomic Region

80750 NEDD4 binding protein 1

Details for - - NEDD4 binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80750

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
RUNX3_RUNX_full_monomeric_10_1 0.259259 0.00000487

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000058 TTTTNTATKGTT NA 820 TMTYCCTTCCTT EWSR1-FLI1_MA0149.1, V$EWSR1FLI1_01_M02252

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.14 ACCGCG NA 1.25 TCACCGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.63 GTCGCG NA NA 0.79 CTCNTNGG mmu-mir-714, mmu-mir-375-5p 7mer_m8

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-362-5p 0.434783 0.0000125

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