TargetScan_91 megaCluster: 11 Residual: 0.27 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_91	11	0.27	15	0	0.857764	0

Members

Displaying 1 - 31 of 31

100043772 zinc finger protein 850 Details for mCG_23673 - zinc finger protein 850 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100043772 Tuberculist Genomic Region	105446 guanosine monophosphate reductase 2 Details for - - guanosine monophosphate reductase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105446 Tuberculist Genomic Region
107652 UDP-N-acetylglucosamine pyrophosphorylase 1 Details for - - UDP-N-acetylglucosamine pyrophosphorylase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107652 Tuberculist Genomic Region	108000 centromere protein F Details for - - centromere protein F GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108000 Tuberculist Genomic Region
12183 2,3-bisphosphoglycerate mutase Details for - - 2,3-bisphosphoglycerate mutase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12183 Tuberculist Genomic Region	12628 complement component factor h Details for - - complement component factor h GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12628 Tuberculist Genomic Region
13682 eukaryotic translation initiation factor 4A2 Details for - - eukaryotic translation initiation factor 4A2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13682 Tuberculist Genomic Region	217303 CD300A antigen Details for RP23-254J18.3 - CD300A antigen GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 217303 Tuberculist Genomic Region
225326 phosphoinositide-3-kinase, class 3 Details for - - phosphoinositide-3-kinase, class 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 225326 Tuberculist Genomic Region	22630 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide Details for - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22630 Tuberculist Genomic Region
231070 insulin induced gene 1 Details for - - insulin induced gene 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231070 Tuberculist Genomic Region	23986 enoyl-Coenzyme A delta isomerase 2 Details for - - enoyl-Coenzyme A delta isomerase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 23986 Tuberculist Genomic Region
320332 histone cluster 4, H4 Details for mCG_49272 - histone cluster 4, H4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320332 Tuberculist Genomic Region	56046 ubiquinol-cytochrome c reductase complex assembly factor 1 Details for RP23-380B10.2 - ubiquinol-cytochrome c reductase complex assembly factor 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56046 Tuberculist Genomic Region
67681 mitochondrial ribosomal protein L18 Details for - - mitochondrial ribosomal protein L18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67681 Tuberculist Genomic Region	70385 spindle apparatus coiled-coil protein 1 Details for RP23-329D21.1 - spindle apparatus coiled-coil protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70385 Tuberculist Genomic Region
72128 RIKEN cDNA 2610008E11 gene Details for - - RIKEN cDNA 2610008E11 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72128 Tuberculist Genomic Region	72183 sorting nexin 6 Details for - - sorting nexin 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72183 Tuberculist Genomic Region
76863 DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) Details for - - DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76863 Tuberculist Genomic Region	78767 EF-hand calcium binding domain 11 Details for - - EF-hand calcium binding domain 11 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 78767 Tuberculist Genomic Region
97122 histone cluster 2, H4 Details for - - histone cluster 2, H4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 97122 Tuberculist Genomic Region	99152 anaphase promoting complex subunit 2 Details for RP23-132N23.17-001 - anaphase promoting complex subunit 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 99152 Tuberculist Genomic Region
114143 ATPase, H+ transporting, lysosomal V0 subunit B Details for RP23-133J9.4 - ATPase, H+ transporting, lysosomal V0 subunit B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 114143 Tuberculist Genomic Region	11766 adaptor protein complex AP-1, gamma 2 subunit Details for - - adaptor protein complex AP-1, gamma 2 subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11766 Tuberculist Genomic Region
20813 signal recognition particle 14 Details for RP23-450P9.3 - signal recognition particle 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20813 Tuberculist Genomic Region	230098 Rho guanine nucleotide exchange factor (GEF) 39 Details for RP23-195K8.7 - Rho guanine nucleotide exchange factor (GEF) 39 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230098 Tuberculist Genomic Region
234814 methenyltetrahydrofolate synthetase domain containing Details for - - methenyltetrahydrofolate synthetase domain containing GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 234814 Tuberculist Genomic Region	384763 zinc finger protein 667 Details for - - zinc finger protein 667 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 384763 Tuberculist Genomic Region
66591 MAD2L1 binding protein Details for - - MAD2L1 binding protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66591 Tuberculist Genomic Region	73694 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7 Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73694 Tuberculist Genomic Region
76478 4HAUS augmin-like complex, subunit 8 Details for - - 4HAUS augmin-like complex, subunit 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76478 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_EHF_03_M02052	0.354839	0.0000374

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.0091	AAARWAAACARA	NA	16	YGGCCCCGCCCC	Klf4_MA0039.2, SP1_MA0079.2, V$SP4_Q5_M01273, V$SP1_Q6_M00196, V$SP1_Q6_01_M00931, V$SP1_Q4_01_M00932, V$KLF7_03_M02773, V$GC_01_M00255, V$SP1_02_M01303, V$SP1_Q2_01_M00933, V$MAZR_01_M00491, V$GKLF_02_M01588, V$SP1_03_M02281, V$CKROX_Q2_M01175, V$SP2_01_M01783, V$UF1H3BETA_Q6_M01068, V$SP4_03_M02810, V$ZFP281_01_M01597, V$E2F3_Q6_M02089, V$SMAD4_04_M02898, V$MAZ_Q6_M00649, V$SP1_01_M00008, V$KROX_Q6_M00982, V$ZBP89_Q4_M01816, V$CACD_01_M01113, V$ZFP281_04_M02831, V$ZFP740_03_M02834, V$EGR1_Q6_M01873, V$MAZ_Q6_01_M02023, V$EGR1_06_M02744, V$SP4_04_M02914, V$FKLF_Q5_M01837, V$ZNF219_01_M01122, V$BCL6B_04_M02844, V$ETF_Q6_M00695, V$ZFP410_04_M02936, V$EKLF_Q5_M01874, V$SP1SP3_Q4_M01219, V$CNOT3_01_M01253, V$E2F_Q2_M00803, Klf7.1, Sp4.1, Smad3.1, Egr1.1, Zfp281.2, Zfp740.1, Sp4.2, Bcl6b.2, Zfp410.1, Ascl2.2, Glis2.1, Zif268.1, Klf7.2, SP4_C2H2_full_monomeric_17_1, KLF14_C2H2_DBD_monomeric_14_1, Klf12_C2H2_DBD_monomeric_15_1, SP1_C2H2_DBD_monomeric_11_1, KLF13_C2H2_full_monomeric_18_1, KLF16_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, ZNF740_C2H2_full_monomeric_10_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.34	GTCGCG	Zfp161.2, Max.2	1.32	CGGCGGTT	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.44	GCGACG	NA	NA	0.59	TCCTAANG	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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