Rv0047c Transcriptional regulator, PadR family

Rv0047c (Transcriptional regulator, PadR family) is predicted to be co-regulated in modules bicluster_0402 with residual 0.39 and bicluster_0509 with residual 0.59.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 650.00 for bicluster_0402 and 53.00 and 2,600.00 for bicluster_0509 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 151 - 160 of 229
Gene Target Differential Expression Distance Expression pvalue Type
No 7 0.15 0.723014 CDS
No 7 0.02 0.973004 CDS
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)
No 23 -0.06 0.905501 CDS
Acetyltransferase, GNAT family
No -8 -0.18 0.689537 Primary.TSS
No -7 -0.16 0.83856 CDS
FF domain protein
No -115 0.18 0.609138 Primary.TSS
Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
No 69 0.16 0.46457 Primary.TSS
ATPases involved in chromosome partitioning
No 69 0.36 0.527116 Antisense.TSS
No 2 0.39 0.238318 Primary.TSS
Translation elongation factor Ts
No 20 0.27 0.234989 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.48 U
D3I 3 3 3.83 10.97 I
D3U 3 3 3.83 11.73 U
D5I 9 5 6.00 8.66 I
D5U 17 5 6.00 9.71 U
D7I 18 7 8.14 9.30 I
D7U 19 7 8.14 10.18 U
D14I 4 14 15.63 4.10 I
D14U 4 14 15.63 8.10 U
D17I 3 17 19.15 I
D17U 3 17 19.15 6.35 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 6.04 U
D24I 3 24 26.60 I
D24U 3 24 26.60 4.50 U
D28I 4 28 30.61 I
D28U 4 28 30.61 4.49 U