Rv0047c Transcriptional regulator, PadR family

Rv0047c (Transcriptional regulator, PadR family) is predicted to be co-regulated in modules bicluster_0402 with residual 0.39 and bicluster_0509 with residual 0.59.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 650.00 for bicluster_0402 and 53.00 and 2,600.00 for bicluster_0509 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 161 - 170 of 229
Gene Target Differential Expression Distance Expression pvalue Type
SSU ribosomal protein S2p (SAe)
No -5 0.24 0.475959 Antisense.TSS
Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase
No -17 -0.26 0.509046 Primary.TSS
UDP-glucoronosyl and UDP-glucosyltransferases family protein
No -105 0.73 0.263291 Internal.TSS
PROBABLE INTEGRAL MEMBRANE PROTEIN
No -66 0.05 0.950534 Primary.TSS
2,5-diketo-D-gluconic acid reductase (EC 1.1.1.-)
No -14 0 0.999555 Primary.TSS
Putative lipoprotein LppY
No -48 0.33 0.689356 CDS
Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)
No 68 0.55 0.435536 Primary.TSS
No -17 -0.19 0.767739 CDS
Electron transfer flavoprotein, alpha subunit
No 13 -0.07 0.817141 CDS
Short chain dehydrogenase
No -4 0.27 0.464309 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.48 U
D3I 3 3 3.83 10.97 I
D3U 3 3 3.83 11.73 U
D5I 9 5 6.00 8.66 I
D5U 17 5 6.00 9.71 U
D7I 18 7 8.14 9.30 I
D7U 19 7 8.14 10.18 U
D14I 4 14 15.63 4.10 I
D14U 4 14 15.63 8.10 U
D17I 3 17 19.15 I
D17U 3 17 19.15 6.35 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 6.04 U
D24I 3 24 26.60 I
D24U 3 24 26.60 4.50 U
D28I 4 28 30.61 I
D28U 4 28 30.61 4.49 U