Rv0047c Transcriptional regulator, PadR family

Rv0047c (Transcriptional regulator, PadR family) is predicted to be co-regulated in modules bicluster_0402 with residual 0.39 and bicluster_0509 with residual 0.59.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 650.00 for bicluster_0402 and 53.00 and 2,600.00 for bicluster_0509 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 191 - 200 of 229
Gene Target Differential Expression Distance Expression pvalue Type
RNA polymerase sigma-70 factor
No -49 -0.09 0.840848 CDS
RNA polymerase sigma-70 factor
No 24 -0.09 0.840848 Internal.TSS
ATPase YjeE, predicted to have essential role in cell wall biosynthesis
No 34 0.37 0.274274 CDS
PPE family protein
Induced -12 1.4 0.0109525 CDS
PPE family protein
No 17 0.65 0.229849 CDS
PPE family protein
No -106 0.65 0.229849 Internal.TSS
Phosphoglucosamine mutase (EC 5.4.2.10)
No 36 -0.07 0.791575 Primary.TSS
PPE family protein
No -99 -0.26 0.698876 Primary.TSS
MCE-associated transmembrane protein
No -52 0.05 0.910598 CDS
PE-PGRS virulence associated protein
No -91 -0.19 0.764065 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.48 U
D3I 3 3 3.83 10.97 I
D3U 3 3 3.83 11.73 U
D5I 9 5 6.00 8.66 I
D5U 17 5 6.00 9.71 U
D7I 18 7 8.14 9.30 I
D7U 19 7 8.14 10.18 U
D14I 4 14 15.63 4.10 I
D14U 4 14 15.63 8.10 U
D17I 3 17 19.15 I
D17U 3 17 19.15 6.35 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 6.04 U
D24I 3 24 26.60 I
D24U 3 24 26.60 4.50 U
D28I 4 28 30.61 I
D28U 4 28 30.61 4.49 U