Rv0047c Transcriptional regulator, PadR family

Rv0047c (Transcriptional regulator, PadR family) is predicted to be co-regulated in modules bicluster_0402 with residual 0.39 and bicluster_0509 with residual 0.59.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 650.00 for bicluster_0402 and 53.00 and 2,600.00 for bicluster_0509 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 101 - 110 of 229
Gene Target Differential Expression Distance Expression pvalue Type
Resuscitation-promoting factor RpfC
No -41 -0.09 0.884673 Antisense.TSS
Resuscitation-promoting factor RpfC
No -93 -0.09 0.884673 CDS
Resuscitation-promoting factor RpfC
No 5 -0.09 0.884673 Antisense.TSS
No -23 -0.32 0.439935 Primary.TSS
Transcriptional repressor Mce3R, TetR family
No 30 0.03 0.971816 Primary.TSS
No -28 0.24 0.637683 CDS
No -7 0.82 0.0826966 Primary.TSS
Possible membrane protein
No 11 0.03 0.948306 Internal.TSS
No 51 0.42 0.556377 CDS
No 51 0.04 0.967188 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.48 U
D3I 3 3 3.83 10.97 I
D3U 3 3 3.83 11.73 U
D5I 9 5 6.00 8.66 I
D5U 17 5 6.00 9.71 U
D7I 18 7 8.14 9.30 I
D7U 19 7 8.14 10.18 U
D14I 4 14 15.63 4.10 I
D14U 4 14 15.63 8.10 U
D17I 3 17 19.15 I
D17U 3 17 19.15 6.35 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 6.04 U
D24I 3 24 26.60 I
D24U 3 24 26.60 4.50 U
D28I 4 28 30.61 I
D28U 4 28 30.61 4.49 U