Rv0047c Transcriptional regulator, PadR family

Rv0047c (Transcriptional regulator, PadR family) is predicted to be co-regulated in modules bicluster_0402 with residual 0.39 and bicluster_0509 with residual 0.59.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 650.00 for bicluster_0402 and 53.00 and 2,600.00 for bicluster_0509 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 31 - 40 of 229
Gene Target Differential Expression Distance Expression pvalue Type
TesB-like acyl-CoA thioesterase 3
No -13 0.11 0.769934 CDS
Cyclopropane-fatty-acyl-phospholipid synthase 2, CmaA2 (EC 2.1.1.79)
No -114 0.16 0.744032 Primary.TSS
No -124 0.15 0.809668 Primary.TSS
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
No -145 -0.03 0.93391 Primary.TSS
No 7 0.72 0.43733 Primary.TSS
No -68 0.2 0.683031 Primary.TSS
No -68 -0.01 0.989856 Internal.TSS
Methoxy mycolic acid synthase 1 MmaA1 (EC 2.1.1.-)
No -76 0.47 0.18897 Antisense.TSS
Methoxy mycolic acid synthase 1 MmaA1 (EC 2.1.1.-)
No -86 0.47 0.18897 CDS
No 8 -0.01 0.995976 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.48 U
D3I 3 3 3.83 10.97 I
D3U 3 3 3.83 11.73 U
D5I 9 5 6.00 8.66 I
D5U 17 5 6.00 9.71 U
D7I 18 7 8.14 9.30 I
D7U 19 7 8.14 10.18 U
D14I 4 14 15.63 4.10 I
D14U 4 14 15.63 8.10 U
D17I 3 17 19.15 I
D17U 3 17 19.15 6.35 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 6.04 U
D24I 3 24 26.60 I
D24U 3 24 26.60 4.50 U
D28I 4 28 30.61 I
D28U 4 28 30.61 4.49 U