Rv0485 Transcriptional regulatory protein

Summary

Product Feature Type Start End Strand Length AA Length is TF
Rv0485 Transcriptional regulatory protein CDS 573984 575300 + 1 317 438 FALSE

Rv0485 (Transcriptional regulatory protein) is predicted to be co-regulated in modules bicluster_0485 with residual 0.51 and bicluster_0528 with residual 0.42.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.07 for bicluster_0485 and 0.00 and 47.00 for bicluster_0528 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Product (LegacyBRC) Product (RefSeq)
Uncharacterized protein Rv0485_MT0503 transcriptional regulatory protein
Operon # Operon
328
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

Not assigned Not assigned
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

not assigned to any KEGG Pathway.
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15607626 NP_214999.1 Run
No TFOE experiment results were found

Quantitative Proteomics Data

t-test p-value Cholesterol/Glycerol Ratio
0.000000 0.02

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated: 0.0000379903
p-value INH: 0.0334228
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D28I 4 28 30.61 8.27 I
D24I 3 24 26.60 8.53 I
D21I 4 21 23.23 10.45 I
D17I 3 17 19.15 11.08 I
D14I 4 14 15.63 12.37 I
D5I 9 5 6.00 13.66 I
D5U 17 5 6.00 13.67 U
D28U 4 28 30.61 13.75 U
D7I 18 7 8.14 13.76 I
D24U 3 24 26.60 14.04 U
D14U 4 14 15.63 14.07 U
D17U 3 17 19.15 14.08 U
D21U 4 21 23.23 14.09 U
D3I 3 3 3.83 14.35 I
D7U 19 7 8.14 14.35 U
D3U 3 3 3.83 14.41 U
D0U 27 0 0.00 14.52 U