Rv0602c Two component DNA binding Transcriptional regulatory protein TcrA

Rv0602c (Two component DNA binding Transcriptional regulatory protein TcrA) is predicted to be co-regulated in modules bicluster_0067 with residual 0.54 and bicluster_0207 with residual 0.51.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 180.00 and 34.00 for bicluster_0067 and 150.00 and 95.00 for bicluster_0207 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 61 - 70 of 75
Gene Target Differential Expression Distance Expression pvalue Type
Protein often found in Actinomycetes clustered with signal peptidase and/or RNaseHII
No -150 0.06 0.932788 Primary.TSS
Ribonuclease HII (EC 3.1.26.4)
No -150 0.09 0.861012 Internal.TSS
(MTCY24G1.02), len: 496 aa, Probable polyketide synthase, almost identical to G560508 PKS002B (495 aa), fasta scores, opt: 3270, E(): 0, (99.6% identity in 496 aa overlap); contains PS00606 Beta-ketoacyl synthases active site; similar to MTCY338.20 (49.9% identity in 465 aa overlap) and MTCY24G1.09 (50.2% identity in 454 aa overlap) and MTCY22H8.03 (47.6% identity in 437 aa overlap)
No -72 0.23 0.699673 CDS
Oxidoreductase
No -41 -0.35 0.246891 CDS
Galactoside O-acetyltransferase (EC 2.3.1.18)
No 53 0.23 0.333487 Primary.TSS
No -13 -0.23 0.507983 Primary.TSS
No -27 0.15 0.706269 Internal.TSS
No -27 0.28 0.689307 Primary.TSS
PE family protein
No 9 -0.63 0.157964 Primary.TSS
No -20 -0.39 0.437811 Internal.TSS
not assigned to any KEGG Pathway.
GO:0008150

biological_process

biological_process

Details: 
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO Category: 
biological_process
66
Total items in this category:  
GO:0008150

biological_process

biological_process

Details: 
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO Category: 
biological_process
66
Total items in this category:  
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.65 U
D3I 3 3 3.83 12.79 I
D3U 3 3 3.83 12.36 U
D5I 9 5 6.00 11.69 I
D5U 17 5 6.00 11.43 U
D7I 18 7 8.14 13.10 I
D7U 19 7 8.14 12.80 U
D14I 4 14 15.63 12.54 I
D14U 4 14 15.63 12.31 U
D17I 3 17 19.15 12.39 I
D17U 3 17 19.15 12.14 U
D21I 4 21 23.23 12.26 I
D21U 4 21 23.23 12.11 U
D24I 3 24 26.60 12.19 I
D24U 3 24 26.60 12.21 U
D28I 4 28 30.61 11.71 I
D28U 4 28 30.61 12.00 U