Rv1219c Transcriptional regulator, TetR family

Rv1219c (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0078 with residual 0.48 and bicluster_0173 with residual 0.41.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 360.00 and 14,000.00 for bicluster_0078 and 11.00 and 12,000.00 for bicluster_0173 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 21 - 28 of 28
Gene Target Differential Expression Distance Expression pvalue Type
DNA or RNA helicase of superfamily protein II
No -92 0.25 0.82604 CDS
Chromosome partition protein smc
No -86 -0.36 0.248012 Internal.TSS
WhiB-like transcription regulator
No 24 -0.59 0.231133 Primary.TSS
UDP-galactose-lipid carrier transferase (EC 2.-.-.-)
No 43 -0.16 0.633302 Primary.TSS
Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase
No 43 0 0.998583 Internal.TSS
No -62 -0.81 0.228178 Primary.TSS
Induced 66 1.23 0.0000184 Internal.TSS
Induced 21 1.23 0.0000184 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D24I 3 24 26.60 I
D28I 4 28 30.61 I
D17I 3 17 19.15 2.31 I
D21I 4 21 23.23 3.66 I
D14I 4 14 15.63 4.26 I
D28U 4 28 30.61 8.55 U
D21U 4 21 23.23 9.35 U
D24U 3 24 26.60 9.53 U
D17U 3 17 19.15 10.44 U
D7I 18 7 8.14 10.73 I
D14U 4 14 15.63 11.28 U
D5I 9 5 6.00 11.35 I
D5U 17 5 6.00 13.09 U
D7U 19 7 8.14 13.26 U
D3U 3 3 3.83 13.44 U
D3I 3 3 3.83 13.62 I
D0U 27 0 0.00 13.95 U