Rv1219c Transcriptional regulator, TetR family

Rv1219c (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0078 with residual 0.48 and bicluster_0173 with residual 0.41.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 360.00 and 14,000.00 for bicluster_0078 and 11.00 and 12,000.00 for bicluster_0173 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 11 - 20 of 28
Gene Target Differential Expression Distance Expression pvalue Type
EmrB/QacA family drug resistance transporter
Repressed -150 -1.08 0.0000000196 CDS
PE family protein
No -46 0.43 0.248882 CDS
No 20 -0.64 0.117949 CDS
Putative conserved alanine, valine and leucine rich integral membrane protein
Repressed 24 -2.47 2.22e-22 Primary.TSS
No 0 -0.33 0.271879 CDS
Ribosome recycling factor
No 54 -0.09 0.795556 Primary.TSS
Uridylate kinase (EC 2.7.4.-)
No 54 -0.42 0.000570694 Internal.TSS
Uridylate kinase (EC 2.7.4.-)
No -16 -0.42 0.000570694 Internal.TSS
Repressed -129 -0.71 0.0491792 CDS
Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)
Repressed -14 -2.6 0 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D28I 4 28 30.61 I
D24I 3 24 26.60 I
D17I 3 17 19.15 2.31 I
D21I 4 21 23.23 3.66 I
D14I 4 14 15.63 4.26 I
D28U 4 28 30.61 8.55 U
D21U 4 21 23.23 9.35 U
D24U 3 24 26.60 9.53 U
D17U 3 17 19.15 10.44 U
D7I 18 7 8.14 10.73 I
D14U 4 14 15.63 11.28 U
D5I 9 5 6.00 11.35 I
D5U 17 5 6.00 13.09 U
D7U 19 7 8.14 13.26 U
D3U 3 3 3.83 13.44 U
D3I 3 3 3.83 13.62 I
D0U 27 0 0.00 13.95 U