Rv1719 Transcriptional regulator, IclR family

Rv1719 (Transcriptional regulator, IclR family) is predicted to be co-regulated in modules bicluster_0221 with residual 0.50 and bicluster_0535 with residual 0.57.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 15.00 and 780.00 for bicluster_0221 and 11.00 and 3,000.00 for bicluster_0535 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 31 - 37 of 37
Gene Target Differential Expression Distance Expression pvalue Type
PROBABLE TRANSPOSASE
No 3 0.25 0.68812 CDS
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
No 45 -0.03 0.972698 Internal.TSS
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
No 45 0.16 0.746602 Primary.TSS
Probable cytochrome P450 137 cyp137 (EC 1.14.-.-)
No -111 0.29 0.608193 Internal.TSS
Dihydroflavonol-4-reductase (EC 1.1.1.219)
Repressed 24 -1.2 0.000000000000107 Internal.TSS
Dihydroflavonol-4-reductase (EC 1.1.1.219)
Repressed 39 -1.2 0.000000000000107 CDS
Hypothetical alanine rich protein
No 4 0.02 0.983096 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D28I 4 28 30.61 12.41 I
D24I 3 24 26.60 12.97 I
D5I 9 5 6.00 13.05 I
D5U 17 5 6.00 13.15 U
D21I 4 21 23.23 13.69 I
D17I 3 17 19.15 14.18 I
D28U 4 28 30.61 14.30 U
D7I 18 7 8.14 14.40 I
D7U 19 7 8.14 14.60 U
D24U 3 24 26.60 14.64 U
D21U 4 21 23.23 14.67 U
D14I 4 14 15.63 14.78 I
D0U 27 0 0.00 14.97 U
D17U 3 17 19.15 15.08 U
D3U 3 3 3.83 15.11 U
D14U 4 14 15.63 15.14 U
D3I 3 3 3.83 15.20 I