Rv1985c HTH-type transcriptional regulator

Rv1985c (HTH-type transcriptional regulator) is predicted to be co-regulated in modules bicluster_0007 with residual 0.55 and bicluster_0380 with residual 0.52.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0007 and 0.07 and 0.10 for bicluster_0380 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 121 - 130 of 147
Gene Target Differential Expression Distance Expression pvalue Type
Universal stress protein family
No 66 -0.19 0.786851 Primary.TSS
PPE family protein
No -10 0.48 0.000439507 Primary.TSS
Putative oxidoreductase
No 18 -0.2 0.350534 Primary.TSS
WhiB-like transcription regulator
No -28 0.21 0.655431 Primary.TSS
Alkane-1 monooxygenase (EC 1.14.15.3)
No 34 -0.25 0.540912 Primary.TSS
No 2 -0.21 0.717294 Primary.TSS
Probable L-lysine-epsilon aminotransferase (EC 2.6.1.36) (L-lysine aminotransferase) (Lysine 6-aminotransferase)
No 52 0.05 0.92429 Primary.TSS
Mobile element protein
No -59 0.16 0.646576 CDS
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
No 42 -0.17 0.801063 Primary.TSS
Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
No 42 -0.12 0.883249 Internal.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 8.34 U
D14I 4 14 15.63 3.27 I
D14U 4 14 15.63 6.73 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.97 U
D21I 4 21 23.23 2.50 I
D21U 4 21 23.23 6.26 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.95 U
D28I 4 28 30.61 I
D28U 4 28 30.61 5.77 U
D3I 3 3 3.83 7.89 I
D3U 3 3 3.83 8.32 U
D5I 9 5 6.00 10.84 I
D5U 17 5 6.00 11.33 U
D7I 18 7 8.14 6.54 I
D7U 19 7 8.14 7.53 U