Rv1985c HTH-type transcriptional regulator

Rv1985c (HTH-type transcriptional regulator) is predicted to be co-regulated in modules bicluster_0007 with residual 0.55 and bicluster_0380 with residual 0.52.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0007 and 0.07 and 0.10 for bicluster_0380 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 41 - 50 of 147
Gene Target Differential Expression Distance Expression pvalue Type
Polyketide synthase
No -18 -0.02 0.956794 Primary.TSS
Lipoprotein LprD
No -142 0.08 0.835301 Primary.TSS
No -39 0.36 0.510813 Antisense.TSS
\Probable conserved Proline, Glycine, Valine-rich secreted protein\\\""
No -85 0.33 0.238719 Primary.TSS
No -28 -0.32 0.571692 CDS
Probable phiRV1 phage protein
No -44 0.12 0.863558 CDS
Partial REP13E12 repeat protein
No 39 -0.25 0.347079 Primary.TSS
PE family protein
No -20 -0.4 0.0355987 Primary.TSS
Chalcone synthase (EC 2.3.1.74)
No -22 -0.06 0.859416 Primary.TSS
Transcriptional regulator, ArsR family
No 29 -0.26 0.352947 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D28I 4 28 30.61 I
D28U 4 28 30.61 5.77 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.95 U
D21I 4 21 23.23 2.50 I
D21U 4 21 23.23 6.26 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.97 U
D14I 4 14 15.63 3.27 I
D14U 4 14 15.63 6.73 U
D7I 18 7 8.14 6.54 I
D7U 19 7 8.14 7.53 U
D5I 9 5 6.00 10.84 I
D5U 17 5 6.00 11.33 U
D3U 3 3 3.83 8.32 U
D3I 3 3 3.83 7.89 I
D0U 27 0 0.00 8.34 U