Rv1985c HTH-type transcriptional regulator

Rv1985c (HTH-type transcriptional regulator) is predicted to be co-regulated in modules bicluster_0007 with residual 0.55 and bicluster_0380 with residual 0.52.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0007 and 0.07 and 0.10 for bicluster_0380 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 61 - 70 of 147
Gene Target Differential Expression Distance Expression pvalue Type
Universal stress protein family
No 34 -0.38 0.396553 Primary.TSS
Trehalose-6-phosphate phosphatase (EC 3.1.3.12)
No -90 -0.4 0.438938 Internal.TSS
Trehalose-6-phosphate phosphatase (EC 3.1.3.12)
No -66 -0.4 0.438938 CDS
4Fe-4S ferredoxin, iron-sulfur binding
No 36 -0.05 0.966297 Primary.TSS
14 kDa antigen (16 kDa antigen) (HSP 16.3)
No 59 -0.26 0.84068 Primary.TSS
Dinucleotide-utilizing enzyme, Rv2032/acg (acr-coregulated gene)
No -81 -0.14 0.897017 Primary.TSS
LSU ribosomal protein L28p
No 51 -0.1 0.896695 CDS
Zinc ABC transporter, periplasmic-binding protein ZnuA
No -43 0.29 0.326292 Primary.TSS
No -85 -0.07 0.812097 Antisense.TSS
PE family protein
No -27 -0.63 0.401759 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D28I 4 28 30.61 I
D28U 4 28 30.61 5.77 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.95 U
D21I 4 21 23.23 2.50 I
D21U 4 21 23.23 6.26 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.97 U
D14I 4 14 15.63 3.27 I
D14U 4 14 15.63 6.73 U
D7I 18 7 8.14 6.54 I
D7U 19 7 8.14 7.53 U
D5I 9 5 6.00 10.84 I
D5U 17 5 6.00 11.33 U
D3I 3 3 3.83 7.89 I
D3U 3 3 3.83 8.32 U
D0U 27 0 0.00 8.34 U