Rv1985c HTH-type transcriptional regulator

Rv1985c (HTH-type transcriptional regulator) is predicted to be co-regulated in modules bicluster_0007 with residual 0.55 and bicluster_0380 with residual 0.52.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0007 and 0.07 and 0.10 for bicluster_0380 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 51 - 60 of 147
Gene Target Differential Expression Distance Expression pvalue Type
Lipoprotein LprJ
No -32 0.2 0.653091 Primary.TSS
No -62 0.02 0.988414 Primary.TSS
Possible membrane protein
No 50 0.02 0.984804 Primary.TSS
Membrane-bound C-5 sterol desaturase Erg3
No -87 -0.48 0.0535318 Primary.TSS
No -34 -0.02 0.958718 Primary.TSS
Cytochrome P450 140
No 64 -0.16 0.4723 CDS
Transcriptional repressor Mce3R, TetR family
No 43 -0.3 0.486145 Primary.TSS
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
No 32 -0.12 0.781412 Primary.TSS
HTH-type transcriptional regulator
Induced 65 5.07 0 CDS
No results were found NA 29 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 8.34 U
D14I 4 14 15.63 3.27 I
D14U 4 14 15.63 6.73 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.97 U
D21I 4 21 23.23 2.50 I
D21U 4 21 23.23 6.26 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.95 U
D28I 4 28 30.61 I
D28U 4 28 30.61 5.77 U
D3I 3 3 3.83 7.89 I
D3U 3 3 3.83 8.32 U
D5I 9 5 6.00 10.84 I
D5U 17 5 6.00 11.33 U
D7I 18 7 8.14 6.54 I
D7U 19 7 8.14 7.53 U