Rv1985c HTH-type transcriptional regulator

Rv1985c (HTH-type transcriptional regulator) is predicted to be co-regulated in modules bicluster_0007 with residual 0.55 and bicluster_0380 with residual 0.52.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0007 and 0.07 and 0.10 for bicluster_0380 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 71 - 80 of 147
Gene Target Differential Expression Distance Expression pvalue Type
No -15 0.34 0.386587 CDS
No 55 0.34 0.386587 Antisense.TSS
Lipoprotein LppL
No 55 -0.12 0.663016 Primary.TSS
PE family protein
No 34 0.05 0.872209 Primary.TSS
Adenosine kinase (EC 2.7.1.20)
No -38 -0.03 0.874766 Primary.TSS
Possible membrane protein
No -116 0.18 0.693746 Primary.TSS
Regulator of polyketide synthase expression
No -6 -0.17 0.546258 Antisense.TSS
No -117 -0.36 0.365696 CDS
NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)
No -18 0.06 0.909144 CDS
NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)
No 42 0.06 0.909144 Internal.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 8.34 U
D3I 3 3 3.83 7.89 I
D3U 3 3 3.83 8.32 U
D5I 9 5 6.00 10.84 I
D5U 17 5 6.00 11.33 U
D7I 18 7 8.14 6.54 I
D7U 19 7 8.14 7.53 U
D14I 4 14 15.63 3.27 I
D14U 4 14 15.63 6.73 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.97 U
D21I 4 21 23.23 2.50 I
D21U 4 21 23.23 6.26 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.95 U
D28I 4 28 30.61 I
D28U 4 28 30.61 5.77 U