Rv1985c HTH-type transcriptional regulator

Rv1985c (HTH-type transcriptional regulator) is predicted to be co-regulated in modules bicluster_0007 with residual 0.55 and bicluster_0380 with residual 0.52.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0007 and 0.07 and 0.10 for bicluster_0380 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 81 - 90 of 147
Gene Target Differential Expression Distance Expression pvalue Type
No -14 -0.13 0.816294 Primary.TSS
ESAT-6-like protein EsxL
No 2 0.27 0.558152 Primary.TSS
putative sodium-dependent bicarbonate transporter
No -37 -0.46 0.00620677 Primary.TSS
Enoyl-CoA hydratase (EC 4.2.1.17)
Repressed -1 -0.96 0.00000000000756 Primary.TSS
No -120 0.47 0.113232 Primary.TSS
No 5 0.07 0.880441 Primary.TSS
DNA-binding protein, CopG family
No 5 0.27 0.570267 Internal.TSS
DNA-binding protein, CopG family
No -19 0.27 0.570267 CDS
Universal stress protein family
No -47 -0.31 0.748074 Primary.TSS
CBS domain protein
No 65 -0.37 0.724922 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D28I 4 28 30.61 I
D28U 4 28 30.61 5.77 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.95 U
D21I 4 21 23.23 2.50 I
D21U 4 21 23.23 6.26 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.97 U
D14I 4 14 15.63 3.27 I
D14U 4 14 15.63 6.73 U
D7I 18 7 8.14 6.54 I
D7U 19 7 8.14 7.53 U
D5I 9 5 6.00 10.84 I
D5U 17 5 6.00 11.33 U
D3I 3 3 3.83 7.89 I
D3U 3 3 3.83 8.32 U
D0U 27 0 0.00 8.34 U