Rv1985c HTH-type transcriptional regulator

Rv1985c (HTH-type transcriptional regulator) is predicted to be co-regulated in modules bicluster_0007 with residual 0.55 and bicluster_0380 with residual 0.52.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0007 and 0.07 and 0.10 for bicluster_0380 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 91 - 100 of 147
Gene Target Differential Expression Distance Expression pvalue Type
No -88 -0.44 0.55384 Internal.TSS
No -81 -0.12 0.849972 Primary.TSS
gene 36 protein, putative
No -45 0.46 0.27724 Primary.TSS
No -74 -0.52 0.414765 Internal.TSS
No 58 0.29 0.424815 Antisense.TSS
No 39 0.29 0.424815 Internal.TSS
Integral membrane protein TerC
No 39 -0.26 0.450834 Primary.TSS
Putative conserved alanine, valine and leucine rich integral membrane protein
No 37 -0.42 0.229447 Primary.TSS
No 13 -0.21 0.467736 CDS
Phage shock protein A (IM30) , suppresses sigma54-dependent transcription
No -53 -0.06 0.759431 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D17I 3 17 19.15 I
D21I 4 21 23.23 2.50 I
D24I 3 24 26.60 I
D28I 4 28 30.61 I
D3I 3 3 3.83 7.89 I
D5I 9 5 6.00 10.84 I
D7I 18 7 8.14 6.54 I
D14I 4 14 15.63 3.27 I
D14U 4 14 15.63 6.73 U
D17U 3 17 19.15 5.97 U
D21U 4 21 23.23 6.26 U
D24U 3 24 26.60 5.95 U
D28U 4 28 30.61 5.77 U
D0U 27 0 0.00 8.34 U
D3U 3 3 3.83 8.32 U
D5U 17 5 6.00 11.33 U
D7U 19 7 8.14 7.53 U