Rv1985c HTH-type transcriptional regulator

Rv1985c (HTH-type transcriptional regulator) is predicted to be co-regulated in modules bicluster_0007 with residual 0.55 and bicluster_0380 with residual 0.52.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0007 and 0.07 and 0.10 for bicluster_0380 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 31 - 40 of 147
Gene Target Differential Expression Distance Expression pvalue Type
COG4861: Uncharacterized protein conserved in bacteria
No 37 -0.14 0.596097 CDS
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
No 65 0.38 0.0860639 Primary.TSS
PE family protein
No 18 -0.09 0.856016 Primary.TSS
DNA-binding response regulator TrcR
Repressed 57 -0.91 0.00153306 Primary.TSS
PPE family protein
No 18 -0.06 0.858136 CDS
No -67 -0.07 0.897493 Primary.TSS
No -83 -0.12 0.730229 CDS
Transcriptional regulator, XRE family
No 33 -0.23 0.676826 CDS
2-methylcitrate dehydratase (EC 4.2.1.79)
No 12 0.05 0.958027 CDS
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
No -10 0.28 0.0439923 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 8.34 U
D3I 3 3 3.83 7.89 I
D3U 3 3 3.83 8.32 U
D5I 9 5 6.00 10.84 I
D5U 17 5 6.00 11.33 U
D7U 19 7 8.14 7.53 U
D7I 18 7 8.14 6.54 I
D14I 4 14 15.63 3.27 I
D14U 4 14 15.63 6.73 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.97 U
D21I 4 21 23.23 2.50 I
D21U 4 21 23.23 6.26 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.95 U
D28I 4 28 30.61 I
D28U 4 28 30.61 5.77 U