Rv2884 Transcriptional regulatory protein glnR

Summary

Product Feature Type Start End Strand Length AA Length is TF
Rv2884 Transcriptional regulatory protein glnR CDS 3193393 3194151 + 759 252 FALSE

Rv2884 (Transcriptional regulatory protein glnR) is predicted to be co-regulated in modules bicluster_0153 with residual 0.56 and bicluster_0241 with residual 0.42.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.01 and 20.00 for bicluster_0153 and 5,500.00 and 8,700.00 for bicluster_0241 respectively.

These modules are enriched for following go terms: nucleotide metabolic process .

This gene is found to be for growth on cholesterol.

Mutant available?:

BASS Score Re-Annotated Start Tuberculist Annotated Start
-1.074 3193450 3193393
Product (LegacyBRC) Product (RefSeq)
PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN transcriptional regulatory protein
Operon # Operon
1885
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

Not assigned Not assigned
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

not assigned to any KEGG Pathway.
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15610021 NP_217400.1 Run
No TFOE experiment results were found

Quantitative Proteomics Data

t-test p-value Cholesterol/Glycerol Ratio
0.650000 1.38

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated: 0.00108566
p-value INH: 0.988908
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D5U 17 5 6.00 11.32 U
D7U 19 7 8.14 8.69 U
D14U 4 14 15.63 6.56 U
D17U 3 17 19.15 6.45 U
D21U 4 21 23.23 6.00 U
D24U 3 24 26.60 6.19 U
D28U 4 28 30.61 5.93 U
D0U 27 0 0.00 9.49 U
D3U 3 3 3.83 9.34 U
D7I 18 7 8.14 6.84 I
D14I 4 14 15.63 I
D17I 3 17 19.15 I
D21I 4 21 23.23 1.11 I
D24I 3 24 26.60 I
D28I 4 28 30.61 I
D3I 3 3 3.83 9.34 I
D5I 9 5 6.00 9.79 I