Publications

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2014
Peterson EJR, Reiss DJ, Turkarslan S, et al. "A high-resolution network model for global gene regulation in Mycobacterium tuberculosis." Nucleic Acids Res.. 2014;42(18):11291-303.
Peterson EJR, Reiss DJ, Turkarslan S, et al. "A high-resolution network model for global gene regulation in Mycobacterium tuberculosis." Nucleic Acids Res.. 2014;42(18):11291-303.
Rustad TR, Minch KJ, Ma S, et al. "Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network." Genome Biol.. 2014;15(11):502. (19.36 MB) (20.15 MB)
2015
Turkarslan S, Peterson EJR, Rustad TR, et al. "A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis." Scientific Data. 2015;2: - . (8.9 KB) (157.5 KB) (337.5 KB) (1.33 MB)
Turkarslan S, Peterson EJR, Rustad TR, et al. "A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis." Scientific Data. 2015;2: - . (8.9 KB) (157.5 KB) (337.5 KB) (1.33 MB)
Minch KJ, Rustad TR, Peterson EJR, et al. "The DNA-binding network of Mycobacterium tuberculosis." Nat Commun. 2015;6:5829.
Minch KJ, Rustad TR, Peterson EJR, et al. "The DNA-binding network of Mycobacterium tuberculosis." Nat Commun. 2015;6:5829.
Ma S, Minch KJ, Rustad TR, et al. "Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis." PLoS Comput. Biol.. 2015;11(11):e1004543.
Di Paolo NC, Shafiani S, Day T, et al. "Interdependence between Interleukin-1 and Tumor Necrosis Factor Regulates TNF-Dependent Control of Mycobacterium tuberculosis Infection." Immunity. 2015;43(6):1125-36.
Di Paolo NC, Shafiani S, Day T, et al. "Interdependence between Interleukin-1 and Tumor Necrosis Factor Regulates TNF-Dependent Control of Mycobacterium tuberculosis Infection." Immunity. 2015;43(6):1125-36.
2016
Rothchild AC, Sissons JR, Shafiani S, et al. "MiR-155-regulated molecular network orchestrates cell fate in the innate and adaptive immune response to Mycobacterium tuberculosis." Proc. Natl. Acad. Sci. U.S.A.. 2016;113(41):E6172-E6181.
Rothchild AC, Sissons JR, Shafiani S, et al. "MiR-155-regulated molecular network orchestrates cell fate in the innate and adaptive immune response to Mycobacterium tuberculosis." Proc. Natl. Acad. Sci. U.S.A.. 2016;113(41):E6172-E6181.
Peterson EJR, Ma S, Sherman DR, Baliga NS. "Network analysis identifies Rv0324 and Rv0880 as regulators of bedaquiline tolerance in Mycobacterium tuberculosis." Nat Microbiol. 2016;1(8):16078.
2017
Moguche AO, Musvosvi M, Penn-Nicholson A, et al. "Antigen Availability Shapes T Cell Differentiation and Function during Tuberculosis." Cell Host Microbe. 2017;21(6):695-706.e5.
Moguche AO, Musvosvi M, Penn-Nicholson A, et al. "Antigen Availability Shapes T Cell Differentiation and Function during Tuberculosis." Cell Host Microbe. 2017;21(6):695-706.e5.
Scriba TJ, Penn-Nicholson A, Shankar S, et al. "Sequential inflammatory processes define human progression from M. tuberculosis infection to tuberculosis disease." PLoS Pathog.. 2017;13(11):e1006687.
Woodworth JS, Cohen SB, Moguche AO, et al. "Subunit vaccine H56/CAF01 induces a population of circulating CD4 T cells that traffic into the Mycobacterium tuberculosis-infected lung." Mucosal Immunol. 2017;10(2):555-564.
2018
Cohen SB, Gern BH, Delahaye JL, et al. "Alveolar Macrophages Provide an Early Mycobacterium tuberculosis Niche and Initiate Dissemination." Cell Host Microbe. 2018;24(3):439-446.e4.
Hansen SG, Zak DE, Xu G, et al. "Prevention of tuberculosis in rhesus macaques by a cytomegalovirus-based vaccine." Nat. Med.. 2018;24(2):130-143.
Hansen SG, Zak DE, Xu G, et al. "Prevention of tuberculosis in rhesus macaques by a cytomegalovirus-based vaccine." Nat. Med.. 2018;24(2):130-143.
Hansen SG, Zak DE, Xu G, et al. "Prevention of tuberculosis in rhesus macaques by a cytomegalovirus-based vaccine." Nat. Med.. 2018;24(2):130-143.
2019
Delahaye JL, Gern BH, Cohen SB, et al. "BCG-induced T cells shape Mycobacterium tuberculosis infection before reducing the bacterial burden." bioRxiv. 2019.
Delahaye JL, Gern BH, Cohen SB, et al. "Cutting Edge: Bacillus Calmette–Guérin–Induced T Cells Shape Mycobacterium tuberculosis Infection before Reducing the Bacterial Burden." The Journal of Immunology. 2019;203:807-812.
Duffy FJ, Weiner J, Hansen S, et al. "Immunometabolic Signatures Predict Risk of Progression to Active Tuberculosis and Disease Outcome." Front Immunol. 2019;10:527.
Duffy FJ, Weiner J, Hansen S, et al. "Immunometabolic Signatures Predict Risk of Progression to Active Tuberculosis and Disease Outcome." Front Immunol. 2019;10:527.