| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,668,398 | Δ2 bp | 100% | intergenic (‑63/+18) | ilvH ← / ← ilvI | acetolactate synthase small subunit/acetolactate synthase large subunit |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,668,398 | 0 | A→. | 100.0% | 95.6 | 22 | intergenic (‑63/+19) | ilvH/ilvI | acetolactate synthase small subunit/acetolactate synthase large subunit |
| Reads supporting (aligned to +/- strand): new base (22/0): ref base (0/0): total (22/0) | ||||||||||
| * | NC_014034 | 1,668,399 | 0 | G→. | 100.0% | 95.6 | 22 | intergenic (‑64/+18) | ilvH/ilvI | acetolactate synthase small subunit/acetolactate synthase large subunit |
| Reads supporting (aligned to +/- strand): new base (22/0): ref base (0/0): total (22/0) | ||||||||||
TCTTGATGTTCAGAGCGGCCATTGCCCTCTCCCTTCCGATACTGATTTATCTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCAAGGGGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTATGCGGCTTGCCGG > NC_014034/1668314‑1668490
||
tCTTGATGTTCAGAGCGGCCATTGCCCTCTCCCTTCCGATACTGATTTATCTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGctc > 1:90804/1‑101 (MQ=255)
gCCCTCTCCCTTCCGATACTGATTTATCTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGcgccgccgc > 1:1989625/1‑101 (MQ=255)
tctcCCTTCCGATACTGATTTATCTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGaa > 2:2044812/1‑101 (MQ=255)
ccGATACTGATTTATCTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCgg > 1:2254428/1‑101 (MQ=255)
cGATACTGATTTATCTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGc > 2:2850451/1‑101 (MQ=255)
tttATCTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCga > 2:1939670/1‑101 (MQ=255)
tttATCTTGCCGGAAATATCCCGGGGGGGCCGGGGGGCA..GCGCCCGCCGGCCGCTCTCACACCAGCGCGGCGACGCCTCGGAATGCCTCCGGCTCGGCCgc > 2:4205435/1‑100 (MQ=18)
tATCTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCgaga > 1:127606/1‑101 (MQ=255)
tCTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGagc > 2:19976/1‑101 (MQ=255)
cTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGagca > 2:4148569/1‑101 (MQ=255)
tGCCGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGagcagc > 1:3932463/1‑101 (MQ=255)
ccGGAAATATCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCAt > 2:211852/1‑101 (MQ=255)
atatCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGtt > 2:357462/1‑101 (MQ=255)
tatCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTa > 2:3812190/1‑101 (MQ=255)
atCCCGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTAt > 2:3767056/1‑101 (MQ=255)
ccGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGGGCCGCCGCGGGAGGGCTCGCCAGCGGCGGAAAGCGGCCTTGCGTGCTGCg > 2:1912174/1‑101 (MQ=16)
cGGGGGGTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTATGCgg > 1:494998/1‑101 (MQ=255)
cGGGGGGGCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTATGCgg > 2:1203689/1‑101 (MQ=38)
ggggggTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTATGCGGc > 2:4569660/1‑101 (MQ=255)
gggggTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTATGCGGCt > 2:2254201/1‑101 (MQ=255)
gggggTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTATGCGGCt > 2:680118/1‑101 (MQ=255)
ggggTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTATGCGGCtt > 1:2554557/1‑101 (MQ=255)
ggTCCGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTATGCGGCTTGc > 1:3249060/1‑101 (MQ=255)
ccGGGGGGCA..GCGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTATGCGGCTTGCCgg > 2:1471172/1‑101 (MQ=255)
||
TCTTGATGTTCAGAGCGGCCATTGCCCTCTCCCTTCCGATACTGATTTATCTTGCCGGAAATATCCCGGGGGGTCCGGGGGGCAAGGGGCCCCCCGGCCGCTCTCACACCAGCGCGGCGCCGCCGCGGAAGGCCTCGGCATCGGCCGAGAGCAGCATTTCGTTATGCGGCTTGCCGG > NC_014034/1668314‑1668490
Base quality scores:
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|