| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,640,005 | +A | 95.8% | intergenic (+85/‑60) | mccB → / → mccA | methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,640,005 | 4 | .→A | 95.8% | 2.5 ‑2.5 ‑0.6 | 71 | intergenic (+85/‑60) | mccB/mccA | methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha |
| Reads supporting (aligned to +/- strand): new base (67/1): ref base (2/1): total (69/2) | ||||||||||
| Fisher's exact test strand distribution p-value = 8.33e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.80e-01 | ||||||||||
Only 100 of 108 total aligned reads displayed.
GATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....G....G.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC > NC_014034/1639905‑1640088
|
gATTTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..ggg....g < 2:3242383/101‑1 (MQ=255)
aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGAATTTTGGGGAAAATGAAAACCAACCCCTTTATCTTTCCCCCAAAATACCCGGGGGGC.CC..ggg....g > 1:1178971/1‑101 (MQ=255)
aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..ggg....g....g < 1:2663759/101‑1 (MQ=255)
aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..ggg....g....g < 2:2822602/101‑1 (MQ=255)
tCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGAATTTGGGGCAAGATTAAAACCATCCCTTTCATTTTGCCCCAAAAAA.CCCCGGGGGC.CC..ggg....g....gg > 1:599802/1‑100 (MQ=37)
tCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..ggg....g....gg < 1:1201147/101‑2 (MQ=255)
cTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGATTTGGGGGAAGATGAAAACCATCCCTTTCATCTTTCCCCCAATAT.TCCCGGGGGC.CC..ggg....g....ggg > 1:2059209/1‑99 (MQ=37)
cTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..ggg....g....ggc < 1:2923644/101‑3 (MQ=255)
ttCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGATTTTGGGGAAGATGAAACCCATCCCTTTTATCTTTCCCCCAAAAT.CCCCGGGGGG.CC..ggg....g....gggg > 1:2625853/1‑98 (MQ=25)
ttCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAACCCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..ggg....g....ggca < 1:751088/101‑4 (MQ=255)
ttCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..ggg....g....ggca < 1:2486902/101‑4 (MQ=255)
tCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..ggg....g....ggcag < 1:4533577/101‑5 (MQ=255)
ccGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTTGGGCAAGATGAAAACCATCCCTTTCATCTTTCCCCAAAAAT.TCCGGGGGGG.CC..ggg....g....gggggg > 2:2050754/1‑96 (MQ=25)
ccGGATGTGACTTTCGATGCCTCCGGCGGGGGGATTTTGGGGAAAAAGAAACCCATCCCCTTCATCTTTCCCCCAAAAT.CCCCGGGGGC.CC..cgg....g....gggggc > 1:1222181/1‑96 (MQ=255)
ccGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..ggg....g....ggcagc < 2:3084301/101‑6 (MQ=255)
cGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTTGGGGGAGATGAAAACCATCCCTTTCATCTTTCCCCAAATAA.CCCGGGGGGC.CC..ggg....g....gggggcg > 2:3607415/1‑95 (MQ=25)
cGGATGTGACTTTCGATGCCTCCGGCGGGGCAATTTGGGGTATTTTAAACCCCCGCCTTTTCATTTTCTCCCAATTCT.CCCGTGGGCC.CG..ggg....g....ggacctc > 1:3832942/1‑95 (MQ=255)
cGGATGTGACTTTCGATGCCTCCGGCGGGGAGATTTGGGGGAAAAAGAAAACCATCCCTTTCATTTTTCCCCCAAAAT.CCCCCGGGGG.CC..ggg....g....ggggggg > 1:1241367/1‑95 (MQ=255)
cGGATGTGACTTTCGATGCCTCCGGCGGGGACATTTTGGGGCAGATTCTACCCATCCCCCTCAACTTCCCCCAAATAT.CCCCGGGGGC.GC..tgg....g....ggcactg > 2:3713257/1‑95 (MQ=255)
ggATGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGGAAGATGAAACCCATCCCTTTCATCTTTCCCCAAATAT.CCCCGGGGGC.CC..ggg....g....ggcggcgc > 1:1365722/1‑94 (MQ=37)
ggATGTGACTTTCGATGCCTCCGGCGGGGGGATTTTGGGGAAAAAGGAAAACACCCCTTTCTTCTTGCCCCCAATAT.CCCGGGGGGG.CC..GGG....G....g.....g...g...cggcc > 2:2598487/1‑97 (MQ=255)
gATGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGGAAGATGAAAACCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..ggg....g....ggcggcgcc > 1:576630/1‑93 (MQ=25)
gATGTGACTTTCGATGCCTCCGGCGGGGAGATTTTGGGCAAGGAGAAACCCCTCCCCTTCCTCTTTCCCCAAATAT.CCCCGGGGCC.CC..cgg....g....ggcatcgcc > 1:3848731/1‑93 (MQ=255)
aTGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGCAAGATGAAAACCCTCCCTTTCATCTTGCCCCACAAAT.CCCCGGGGGC.CC..ggg....g....ggcggcgccc > 1:733080/1‑92 (MQ=25)
gtgACTTTCGATGCCTCCGGCGGGGGTATTTTGGGGAAGATGAAACCCATCCCTTTCATTTTGCCCCAAATAT.TCCGCGGGGC.CC..GGG....G....g.....g...g...cgggccccc > 2:3797483/1‑93 (MQ=255)
cGAGGCCGCCGGGGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CG..GGG....GGGCAG.....C...G...CCCCCCGCCACtt < 2:2136944/101‑1 (MQ=18)
aTGCCTCCGGCGGGGATATTTGGGGCAAGATGAAAACCATCCCTTTCATCTTGCCCCCAATAT.CCCGGGGGGC.CC..GGG....GGGGAG.....C...G...CCCCCCGCCACTTcc > 2:4691802/1‑101 (MQ=21)
ccgtcgggcggGGATTTTGGGGGCAAGATGACCCCCACCCCTTCTTTCTCCCCCCAAATCC.CCGGGGGGGC.CG..GGG....GGGGAG.....C...G...CCCCCCGCCACTTCCGc < 2:2146254/95‑1 (MQ=255)
ccggggggggtATATTGGGGGAAAGAGAAACCCCACCCTTTTCATCTCCCCACAAATA..CCGGGGGGGC.CC..GGG....G....GGCC..C...GCC.CCCCCCGCCACTTCCGCCa < 2:4749304/94‑1 (MQ=255)
ggggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCa > 1:164117/1‑101 (MQ=25)
gggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAg > 1:3729482/1‑101 (MQ=25)
ggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAgc > 1:2805380/1‑101 (MQ=25)
atatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAgcgc > 2:316465/1‑101 (MQ=25)
atatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAgcgc > 2:410652/1‑101 (MQ=25)
atatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAgcgc > 2:4711333/1‑101 (MQ=21)
atatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTCCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAgcgc > 1:1615709/1‑101 (MQ=21)
atTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGGGGGAG....G.....C...G...CCCCCCGACACTTCCGCCACGGAGCAGCAccc > 1:2298324/1‑101 (MQ=21)
tttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGcccc > 2:2529038/1‑101 (MQ=25)
tttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGcccc > 1:4421398/1‑101 (MQ=21)
ttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg > 2:943005/1‑101 (MQ=25)
ttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg > 1:3529178/1‑101 (MQ=25)
ttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg > 1:687942/1‑101 (MQ=25)
tGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg > 2:3750556/1‑101 (MQ=25)
ggggCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGc > 2:1939009/1‑101 (MQ=25)
ggggCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGc > 1:3833556/1‑101 (MQ=25)
gggCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGcc > 1:1132578/1‑101 (MQ=25)
cAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt > 2:1881512/1‑101 (MQ=21)
cAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt > 2:3020307/1‑101 (MQ=25)
cAAGATGAAACCCATCCCTTTCATCTTCCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACCGGCCCGCGCCCCGGCCgct > 1:2875967/1‑99 (MQ=18)
aaGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg > 1:4139012/1‑101 (MQ=25)
aaGATGAAACCCATCCCTTTAATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg > 1:4513828/1‑101 (MQ=21)
aGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa > 1:544546/1‑101 (MQ=21)
aGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa > 2:4477221/1‑101 (MQ=25)
aTGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg > 2:3404402/1‑101 (MQ=25)
aaaacccccccccTTTCCTCTTGCCAAAAATGC.CCGGGGGGGC.CG..GGG....G....GGCCCCC...C...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg < 2:3287318/91‑1 (MQ=255)
gAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa > 1:443048/1‑101 (MQ=25)
gAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa > 2:2055668/1‑101 (MQ=25)
aaaCCCATCACTTTCATCTTACCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCAGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg > 2:445350/1‑101 (MQ=21)
aaCCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg > 1:2547690/1‑101 (MQ=25)
aaCACATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg > 1:3654816/1‑101 (MQ=21)
cccATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgag > 2:986686/1‑101 (MQ=25)
cccACCCTTTTCATC.TGCCCCAAATTG.CCCGGGGGGC.CCGGGGG....G....G.....C...GCCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgag < 1:799167/101‑1 (MQ=255)
ccACCCCTTCCATCTGCCCCAAAATCT.CCGGGGGGGC.CG..GGG....G....GCCAC.C...C...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgaga < 2:1581428/101‑1 (MQ=255)
aTCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAcc > 2:1288773/1‑101 (MQ=25)
tCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcg > 1:4538908/1‑101 (MQ=25)
tCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcg > 1:4732557/1‑101 (MQ=25)
ccTTTCATCTTGCCCCAAATAT.CCCGGGGGGCGCG..GGG....G....G.....CAGGG...CCCCCCGCCACTTCCGCCACGGGGCCGCGCCCCGGCCGTTGGCGAAGGGGACcgcg > 2:1487261/1‑101 (MQ=21)
tttCATCTTGCCCCAAATAT.CCCGGGGGGC.TT..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt > 1:4226708/1‑101 (MQ=25)
ttcctcctcccccAAATCC.CCGGGGGGGC.CCGGGGG....G....G.....C...GCCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt < 2:2625701/92‑1 (MQ=255)
ttCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 2:3356416/1‑101 (MQ=25)
ttCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGAGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 1:4229187/1‑101 (MQ=21)
tCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt > 2:4307558/1‑101 (MQ=25)
cATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt > 1:1547649/1‑101 (MQ=25)
cATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt > 1:361970/1‑101 (MQ=25)
cATCTTGCCACAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt > 2:1355015/1‑101 (MQ=25)
tCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTc > 1:1324923/1‑101 (MQ=25)
tCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTc > 1:397874/1‑101 (MQ=25)
cTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa > 1:4457848/1‑101 (MQ=25)
cTTGACCCAAATAT.CCCGGGGGGC.CCG.GGG....G....G.....CAGGG...CCCCCCCCCACTTCCCCCCCGGGGCAACGCCCCGGCCGCTGACGAAGGGGACCCCGAGGTTTCa > 2:4016567/1‑101 (MQ=12)
tGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa > 2:1138210/1‑101 (MQ=25)
tGCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa > 2:3239822/1‑101 (MQ=25)
tccccAAATTC.CCCGGGGGGC.CC..GGG....G....GGC...C...GCCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa < 1:816921/100‑1 (MQ=255)
gCCCCAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaaa > 1:3766772/1‑101 (MQ=25)
cAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATc > 2:1977851/1‑101 (MQ=25)
cAAATAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATc > 1:3555941/1‑101 (MQ=25)
aaaTAT.CCCGGGGGGC.CC..GGG....G....GGCAA.C...G...CCCCCCGCCACTTCAGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGCCGGCGATGTTTCAAAAGAtac > 1:540166/1‑99 (MQ=21)
aaTAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt > 1:2726488/1‑101 (MQ=25)
aaTAT.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt > 1:1443592/1‑101 (MQ=25)
atat.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg > 2:3878987/1‑101 (MQ=37)
atat.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg > 1:878589/1‑101 (MQ=37)
tat.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCCGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGa > 2:4577645/1‑101 (MQ=25)
tat.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGa > 1:2268471/1‑101 (MQ=37)
at.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCCCGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt > 1:101088/1‑101 (MQ=25)
at.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt > 2:1362994/1‑101 (MQ=37)
at.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt > 1:2112544/1‑101 (MQ=37)
t.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCCCGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGCTGTTTCAAAAGATCCTGATc > 1:941516/1‑101 (MQ=25)
t.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATc > 2:2359065/1‑101 (MQ=37)
t.CCCGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATc > 2:3410666/1‑101 (MQ=37)
cGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc > 1:1466382/1‑101 (MQ=37)
cGGGGGGC.CC..GGG....GGGCAG.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc > 1:658632/1‑101 (MQ=37)
|
GATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGC.CC..GGG....G....G.....C...G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC > NC_014034/1639905‑1640088
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 25 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|