| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,867,831 | +C | 5.3% | intergenic (‑233/+82) | RCAP_rcc01729 ← / ← RCAP_rcc01730 | pyridine nucleotide‑disulfide oxidoreductase/U32 family peptidase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,867,831 | 1 | .→C | 5.3% | 5.9 ‑2.1 ‑0.0 | 76 | intergenic (‑233/+82) | RCAP_rcc01729/RCAP_rcc01730 | pyridine nucleotide‑disulfide oxidoreductase/U32 family peptidase |
| Reads supporting (aligned to +/- strand): new base (0/4): ref base (33/39): total (33/43) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.28e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.49e-01 | ||||||||||
Only 100 of 170 total aligned reads displayed.
AGGAAAAGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.G.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGCCA > NC_014034/1867731‑1867927
|
aGGAAAAGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.Ag < 1:4193184/101‑1 (MQ=255)
gAAAAGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCCGCCCCCGCGGCGCGG.A.Aa.c.g > 2:3068121/1‑101 (MQ=37)
aaaaGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCCCCCCGCCCCGCGGGGCCGA.A.Ac.c.g.c > 2:1328980/1‑101 (MQ=37)
aGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCCGCGGGGCGA.A.Ag.c.ggccg > 1:2782469/1‑97 (MQ=255)
gCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.c.g.cccgc < 2:1004535/101‑4 (MQ=255)
gCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.c.g.cccgc < 1:1067540/101‑4 (MQ=255)
cACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.c.g.cccgcc < 2:3914035/101‑5 (MQ=255)
cACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAAAGCCCAGCCCCCGCGGCGCGA.A.AG.C.GAccgcc > 2:2393713/1‑101 (MQ=37)
cTGCTTTCCCCCGCCGGTGTCGCGACAGCGTTGCAAAGCCCGCACCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCAt < 2:54682/101‑1 (MQ=25)
cTGCTTTCCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCAt < 2:1902339/101‑1 (MQ=255)
tccTTTCCCCCGCCCGTGTCGCGACGGCTTTGCAAAGCCCGCACCCCCAAGCGGGCGAGAGGCCAGCCCCCAGCCCCGGCGGCGCAA.A.AG.C.GCCCGCCATg < 2:1736076/99‑1 (MQ=21)
tGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCCGCGGCGCGC.A.AG.c.g.cccgccacg > 1:4238673/1‑94 (MQ=37)
cTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCAGCCCCCGCGGCGCGA.A.AA.CGG.CCGCCACggg > 1:3719027/1‑101 (MQ=37)
tcccccGCCCGTGTCGCGACAGCGTTGCAAAGACCGCACCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATgggcgg < 2:4054453/99‑1 (MQ=255)
tCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCCCCCAGCCCCCGCGGCGCGC.A.AG.C.GCCCCCCACgggcggg > 2:3200353/1‑101 (MQ=25)
cccgcccgTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATgggcggggc < 2:2113388/101‑1 (MQ=255)
cccgcccgTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATgggcggggc < 2:2825120/101‑1 (MQ=255)
cccgcccgTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATgggcggggc < 2:466865/101‑1 (MQ=255)
cgcccgTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAAAGCCCCGCCCCGGCGGCGCGG.A.AG.A.GCCCCCCCTGggcggggg.gg > 2:3680239/1‑101 (MQ=18)
cccgcctCGCGACAGCGTTGCAAAGCCCGCACCCCCAAGCGCGCGAGAGGCCAGCGCCCACCCCCGGCGGCGCAA.A.AGCC.C.CCGCCATGGGCGggtc.gggc < 2:1984277/95‑1 (MQ=18)
cccgTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCAGCCCCGGCGGCGCGA.A.AG.CGG.CCGCCCCGGgcggggg.gggg > 2:3657486/1‑100 (MQ=21)
cgTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCAAGGGCGGGGC.GGggg.c > 2:2908094/1‑101 (MQ=21)
cgTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCAGCCCCCGCGGCGCGC.A.AA.C.GCCCGCCCTGGGGGGGGG.GGggg.c > 1:4021446/1‑101 (MQ=255)
gtgtCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.Ct < 2:2785740/101‑1 (MQ=255)
gtgtCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCAGCCCCCGCGGCGCGA.A.AG.C.GCCCGCCCTGGGCGGGGG.GGggg.cc > 2:1723372/1‑100 (MQ=21)
gtgtCGCGACAGCGTTGCAAAGACCGCACCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.Ct < 1:3680468/101‑1 (MQ=255)
tgtCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCCGCCCCGGCGGCGGGACA.AC.G.G.CCCCCAATGGCGGGGG.GGggg.cgg > 2:1465192/1‑99 (MQ=18)
gtCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCTGGGC.GGGCG.CTgg < 2:2782304/101‑1 (MQ=255)
tCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGc < 1:3782903/101‑1 (MQ=255)
cgcgACAGCGTTGCAAAGCCCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGcc < 1:384559/101‑1 (MQ=255)
gcgACAGCGTTGCAAAGCCCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCg < 1:3365296/101‑1 (MQ=255)
gcgACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCg < 1:2172896/101‑1 (MQ=255)
cgACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCAGCCCCCGCGGCGCGA.A.AG.C.GCCCGCCCCGGGCGGGGC.GGGGG.CCGGGCgg > 1:3288061/1‑100 (MQ=18)
cgACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACACCCCACCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGgcg.cgtggcga > 2:2343341/1‑94 (MQ=17)
gACAGCGTTCCAAAGCCCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.g < 2:3945570/101‑1 (MQ=17)
aaccgtggaaaaGGCCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.ggg < 2:4354083/92‑1 (MQ=14)
cGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAACCCCGGCGGCGCGA.A.AG.C.GCCCGCCACGGGCGGGGC.GGGCG.GCGGcccgggggcc > 1:2328567/1‑93 (MQ=17)
cGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCAGCCCCGGCGGCGCGG.A.AG.C.GCCCGCCCTGGGCGGGGC.GGGGG.CCGGGCCA.GGG.GCt > 2:257199/1‑101 (MQ=17)
tGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCAGCCCCCGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGG.GGGGG.CGGGCCGA.GGG.GCTTTg > 1:1929718/1‑101 (MQ=18)
gCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCCTGGGCGGGGG.GGGGG.CCGGGCGC.GGG.GCCTTgg > 2:3412238/1‑101 (MQ=17)
gCAAAGACCGCACCCCCAAGCGCGCGAGAGGCCAGCCCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTgg < 1:4323134/101‑1 (MQ=17)
aaaaGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTggg < 2:3006605/100‑1 (MQ=255)
aaaGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGGG.CCGGCCGG.GGG.GCTTTgggg > 1:1846674/1‑101 (MQ=17)
aaaGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGGG.CGGGCCGA.GGG.GCTTTtggg > 2:3234801/1‑101 (MQ=17)
aaaGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCAGCCCCCGCGGCGCGA.A.AG.C.GCCCCCCCTGGGCGGGGC.GGGCG.CTCGCCCA.GGG.CCCCTgggg > 1:1790637/1‑101 (MQ=17)
aaGCCCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGc < 2:646298/101‑1 (MQ=255)
aaGACCGCATCCCCAAGCGCGGGAGAGGCCAGCGCCCCGCCCCGGCGGCGCGA.A.AA.C.GCCCGCCATGGGCGGGGG.GGGGGCCGGGCGGG.GGG.CCTTTgggg > 1:2697032/1‑101 (MQ=11)
agcccGCACCCCCAGGCGCGCGAGAGGCCAGCCCCCACCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGcc < 1:2217149/98‑1 (MQ=17)
agcccGCACCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCGGGCGGCGCGA.A.AGCC.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGcc < 2:975486/98‑1 (MQ=17)
aGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCCGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGG.GGGCG.CCGGCCGC.GGG.CCCTTgggggc > 2:2199164/1‑99 (MQ=14)
aGACCGCATCCCCAAGCGCGCGAGAGGCCAACGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CCGGCCCA.GGG.GCCTTgggggc > 1:226936/1‑99 (MQ=17)
gcccGCACCCCCAAGCGGGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGccc < 1:1410313/99‑1 (MQ=17)
cccccacccccAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGcccc < 1:3121839/94‑1 (MQ=17)
ccGCACCCCGAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AGCC.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGccccc < 2:1653819/101‑1 (MQ=17)
gCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CCGGCCCA.GGG.GCTTTGGGGgcccccg > 2:1534129/1‑99 (MQ=17)
cctCCCCAAGCGCGCGGGAGGCCTGCGTCCCGCCCCGGCGGCGCGA.A.TG.C.GCCCGCCATGGGCGGGGC.GGGCG.CCGGGCGA.AGG.CCGCCGGGGCCCCcggg > 2:564940/3‑100 (MQ=17)
cacccccAGGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCcggc < 1:3541273/98‑1 (MQ=17)
cATCCCCAGGCGCGCGAGAGGCCAGCGCCCTGCCGCGGCGGCGCGA.A.AGCC.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCcggc < 1:1563152/101‑1 (MQ=17)
aTCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCCGCGGGGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGGG.CTGGCCGA.GGGCCCTTTGGGGCCCCcgcg > 2:425338/1‑99 (MQ=17)
cccccAGGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCcggcgg < 2:3761235/100‑1 (MQ=255)
ccccAGGCGCGCGAGAGGCCAGCCCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGt < 1:3822991/101‑1 (MQ=17)
ccccAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGGCGG.GGG.CCCTTGGGGGCCCcggcggg > 1:4404547/1‑100 (MQ=17)
cccAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTc < 1:3068309/101‑1 (MQ=255)
ccAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.GCCTTGGGGGCCCccgcgggcg > 2:551995/1‑98 (MQ=14)
ggcgcgcGAGAGGCCGGCGCCCGGCCCCGGCGGCGCGA.A.GG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAggg < 1:209189/100‑1 (MQ=14)
aGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CCGGCCGA.GGG.GCCTTTGGGCCCCCGGCGGGCAggg > 2:2102885/1‑101 (MQ=14)
gcgcgcGAGGGGCCGGCCCCCGGCCCCGGCGGCGCGA.A.GG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAgggg < 1:1688815/101‑1 (MQ=14)
ccgcgcgAGAGCCCACCACCGAGCCCCGGCGCGGCGA.A.GG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAgggg < 2:2971823/100‑1 (MQ=14)
cgcgcgAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.GCCTTGGGGGCCCCCGCGGGCCggggg > 2:2374513/1‑101 (MQ=14)
cacgacagagGCCTGCGCCCCGCCCCGGCGGCGCGA.A.TG.CGG.CCGCCCAAGGCGGGGCGGGGCG.CAGGCCCG.GGG.CCTTTGGGCCCCCGGGGGGGCCgggc > 2:786682/7‑100 (MQ=14)
gggcgGGAGGCCAGCCCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGa < 2:1089698/99‑1 (MQ=17)
gcggggggggCCCGCGCCCCGCCCCGGGGGCGGGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGa < 1:1329072/93‑1 (MQ=14)
gcgcgAGGGGCCAGCGCCCGGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGa < 2:2479381/101‑1 (MQ=17)
ggagaGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AGCC.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCt < 1:2557067/100‑1 (MQ=255)
cgAGAGGCCAGCCCCGAGCCCGGGCGGCCCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCt < 2:3557051/101‑1 (MQ=17)
gggagGCCGGCCCCCCGCCCCGGCGGGGCAA.A.GC.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTg < 1:4051705/99‑1 (MQ=14)
gaggGGCCGGCCCCCGGCCCCGGGGGCGCGA.A.AGCC.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGT.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTg < 1:4635095/101‑1 (MQ=17)
agagGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CCGGCCGAGGGG.CCTTTGGGG.CCCCGGCGGGCAcggggggccgt > 2:3424608/1‑95 (MQ=11)
ggggCCACCCCCCAGCCCCGGCGGCGCGA.A.CGCC.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGtt < 1:3200554/99‑1 (MQ=17)
gagGCCGGCCCCCACCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGtt < 1:1078351/101‑1 (MQ=17)
gggCCGGCCCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTg < 1:4275621/100‑1 (MQ=17)
agGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGGCAGGGGGGTCTGTTg > 1:3326864/1‑101 (MQ=17)
ggCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGGCGGGGGGGTCTGTTgg > 1:893172/1‑100 (MQ=17)
gcccAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTgc < 2:1146790/99‑1 (MQ=255)
cAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCa > 1:3906125/1‑101 (MQ=255)
ggcgcCAAGCCCGGGCGGCGCGA.A.AGCC.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCAt < 1:564773/100‑1 (MQ=18)
ggcccccAGCCCCGGCGGCGCGA.A.AGCC.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCAt < 2:3519897/97‑1 (MQ=18)
cgcCCAGCCCCGGCGGCGCGA.A.AGCC.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATgg < 2:3191857/101‑1 (MQ=255)
cccCGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGcc > 1:3141596/1‑101 (MQ=255)
cAGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCcgc > 1:1922812/1‑101 (MQ=255)
aGCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGGTCTGTTGCGCATGGCcgcg > 2:3647052/1‑101 (MQ=255)
gCCCCGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGt > 1:2933209/1‑101 (MQ=255)
ccgaggcggcGGGA.G.AA.C.GCCCGCCATGGGCGGCGC.GGGCG.CTGGCCGA.GGT.CCTGTGGGGGCCCCGGCGGTCAGGGGCATCTGTTGCGCATGGACGCGTc < 2:2341654/97‑1 (MQ=18)
cccgGGCGGCGCGA.AGCC.C.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTc < 2:906987/101‑1 (MQ=18)
ccccGGCGGCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTc > 2:1182250/1‑101 (MQ=255)
cggcggCGCGA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGG.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTCGAGCATGGCCGTGGCAgc > 1:731389/1‑101 (MQ=17)
ggcgCGA.A.GGCC.C.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGcgccg < 1:189903/101‑1 (MQ=21)
gA.A.AG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTTGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGcc < 1:1534230/101‑1 (MQ=255)
a.a.aG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGCCa > 1:84756/1‑101 (MQ=255)
a.a.aG.C.GCCCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGCCa > 1:1192207/1‑101 (MQ=255)
|
AGGAAAAGCACTGCTTTTCCCCGCCCGTGTCGCGACAGCGTTGCAAAGACCGCATCCCCAAGCGCGCGAGAGGCCAGCGCCCAGCCCCGGCGGCGCGA.A.AG.C.G.CCGCCATGGGCGGGGC.GGGCG.CTGGCCGA.GGG.CCTTTGGGGCCCCCGGCGGTCAGGGGGATCTGTTGCGCATGGCCGCGTCAGCGCCGCGGCCA > NC_014034/1867731‑1867927
Base quality scores:
ATCG
< 3 ≤
ATCG
< 11 ≤
ATCG
< 20 ≤
ATCG
< 31 ≤
ATCG
< 40 ≤
ATCG
|