| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,330,295 | +CGGA | 100% | intergenic (+270/+42) | RCAP_rcc02161 → / ← mrcA | hypothetical protein/penicillin‑binding protein 1A |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,330,295 | 1 | .→C | 100.0% | 84.4 | 45 | intergenic (+270/+42) | RCAP_rcc02161/mrcA | hypothetical protein/penicillin‑binding protein 1A |
| Reads supporting (aligned to +/- strand): new base (24/20): ref base (0/1): total (24/21) | ||||||||||
| * | NC_014034 | 2,330,295 | 2 | .→G | 100.0% | 91.4 | 45 | intergenic (+270/+42) | RCAP_rcc02161/mrcA | hypothetical protein/penicillin‑binding protein 1A |
| Reads supporting (aligned to +/- strand): new base (24/20): ref base (0/1): total (24/21) | ||||||||||
| * | NC_014034 | 2,330,295 | 3 | .→G | 100.0% | 90.1 | 45 | intergenic (+270/+42) | RCAP_rcc02161/mrcA | hypothetical protein/penicillin‑binding protein 1A |
| Reads supporting (aligned to +/- strand): new base (24/20): ref base (0/1): total (24/21) | ||||||||||
| * | NC_014034 | 2,330,295 | 4 | .→A | 100.0% | 87.4 | 45 | intergenic (+270/+42) | RCAP_rcc02161/mrcA | hypothetical protein/penicillin‑binding protein 1A |
| Reads supporting (aligned to +/- strand): new base (24/20): ref base (0/1): total (24/21) | ||||||||||
TATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGGG....G.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCT > NC_014034/2330195‑2330395
||||
tATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGGCCCGG.ATCACAGGCGGCCCGGGCGGATTTCACCTGGGGCCAAAGAtcccgggggtccggggg > 1:3013816/1‑101 (MQ=255)
tATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCCGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccggggg > 1:3782713/1‑101 (MQ=255)
aTTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggc < 1:4637802/101‑2 (MQ=255)
aTTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggc > 1:1126542/1‑100 (MQ=255)
aTTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggc > 1:4748542/1‑100 (MQ=255)
aTTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggc < 1:2449561/101‑2 (MQ=255)
ttGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcgg < 2:1345793/101‑4 (MQ=255)
ttGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcgg < 1:1685990/101‑4 (MQ=255)
cgcCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagc > 2:1677319/1‑95 (MQ=255)
cgcCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagc < 2:2826191/101‑7 (MQ=255)
cgcCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccggggggccgggggcggagc > 2:3525327/1‑95 (MQ=255)
ccAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagccc > 1:472191/1‑93 (MQ=255)
ccAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagccc > 2:4700359/1‑93 (MQ=255)
cAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagcccc < 2:3926916/101‑10 (MQ=38)
cAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagcccc > 2:3186183/1‑92 (MQ=38)
aaGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggggcggagccccc < 2:964445/101‑11 (MQ=38)
ggggCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGcc > 2:4538002/1‑101 (MQ=25)
ggggCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGcc > 2:3432579/1‑101 (MQ=25)
cgcgggCGGGCCCCCGG.ATCCCGGGCGGCCCGGGC.GCCTTCCCCCGGGGCCAAAAGACCCGGGGGGCCGGGGG....GCGGCCCCCCC.GGCGGGTCGCCGAGGCa < 2:3484496/96‑1 (MQ=9)
aTGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCg < 2:767480/101‑1 (MQ=25)
gggcgggCCCCGGCACCCCCGGCGGCCCGGGCGGTTTCCCCCGGGGGCAAAAGACCCGGGGGGCCGGGGGG....GGGA..CCCCCGGGCGGGTCGCCGAGGCATCg < 2:472147/97‑1 (MQ=255)
ggggCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTc < 1:1852478/101‑1 (MQ=25)
ggggCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGCGGCGTccgctc > 2:3883360/1‑96 (MQ=18)
ggCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGGGCCGGGGCGGCGGCTC.gg > 2:4418041/1‑101 (MQ=16)
g.ATCCCCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATc < 2:1569853/101‑1 (MQ=21)
cccggggggcCGGGGCGGTTTCCACCGGGGGCAAAAGATCCGGGGGGTCGGGGGG....GGGGC.CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATccgt < 1:4002500/94‑3 (MQ=12)
cccGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCtt < 1:1128621/100‑1 (MQ=21)
ccGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGGGGGACCGCCCC.CGCGGAAACCCCtt > 2:1305341/1‑101 (MQ=9)
cggcggCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAg < 1:3565725/101‑1 (MQ=25)
ggcggcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGt < 1:4327313/101‑1 (MQ=25)
cggcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGCGGGATCGCCCC.GGC.GAAAACCCCTTGTaa > 1:2896382/1‑101 (MQ=12)
ggcCGGGGCGGCTTTCACCTGGGGCCAAAGACCCGGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTaaa < 2:1204711/101‑1 (MQ=21)
ggcCCGGGCGGCTTTCCCCGGGGGCCAAAGATCCCGGGGGTCGGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTaaa < 2:3384193/101‑1 (MQ=21)
gcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAg < 1:3967738/101‑1 (MQ=25)
gcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGCGGGCCCCCCTC.CGC.GAACACCCTTCGTaaaa > 2:2540011/1‑100 (MQ=9)
ccggggCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGa < 2:224891/98‑1 (MQ=21)
ccggggCGGC.TTCCCCCGGGGGCAAAGGACCCGGGGGGCCGGGGG....GCGGA.CCCCCGGGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGa < 1:2911336/98‑1 (MQ=255)
ccGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGGGGGAACGCCCC.CGCGGAAAACCCtcgtcaaaac > 1:3262484/1‑92 (MQ=2)
cGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGGGGGATCGCCCC.GGCGGAAAACCCtcttcaaaaac > 2:3401721/1‑91 (MQ=9)
cGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGGGGCGTCGCCCCGGGG.GAAACCCCTTGTTAAAAAc > 1:3856951/1‑101 (MQ=9)
gggCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGGGCCGCGGCATCGGCTC.GCC.GGACGCCCCTAATAAACAccg > 1:493771/1‑101 (MQ=9)
ggcggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGAccgc < 1:3557513/101‑1 (MQ=25)
ggcggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGAccgc < 2:4730808/101‑1 (MQ=25)
gcggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGAccgcc < 2:2817226/101‑1 (MQ=25)
cggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGAccgccc < 2:3193896/101‑1 (MQ=25)
ggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGAGGGATCGCCCC.CGC.GGAAACCCTTTGTAAAAAacgcccc > 1:784390/1‑100 (MQ=9)
gcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGGGCCGAGGGATCGCCCC.CGC.GAAAACCCTTAGTAAAAAacgccccc > 1:4642127/1‑99 (MQ=12)
gcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGAGGCATCGCCCC.GGC.GAAATCCCTTTGTAAAGAccgcccgc > 1:2296432/1‑101 (MQ=21)
tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCCCCTC.CGC.GTAAAACCTTACTAAAAAACACCCCCgg > 1:2909700/1‑101 (MQ=9)
ttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCCGGGGATCGCCCC.CGC.GAAAAACCCTAGTAAAAAacgccccccgg > 1:3726270/1‑96 (MQ=2)
tCACCTGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGCCCGCCCGCGGAc < 1:2561865/101‑1 (MQ=21)
ccccgtGGGGCAAAAGACCCCGGGGGCCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGACCGCCCGCGGAc < 2:2763526/96‑1 (MQ=18)
aCCGGGGGCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAg < 2:4450498/101‑1 (MQ=21)
gggCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGGCCAGGCCGCGCCCC.CTC.GGAAATCCTTAGTAAAAAACCCCCGCCGACAGGGGTc > 1:1537311/1‑101 (MQ=2)
ggCCAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATcc < 2:3021403/101‑1 (MQ=21)
ccAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGAGGCATCGCCCC.CGC.GAAAACCCCTAGTAAAAACCGCCCGCGGACAAGGAGCCGa > 2:3109316/1‑101 (MQ=12)
cAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGGGGGCTCGCCCC.CGG.GGAAACCCCTAGTAAAGAACGCCCCCGGGCAGGGGTCCGaa > 1:2729159/1‑101 (MQ=0)
cAAAGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGCGGGATCGCCCC.GGC.GAAAACCCTTAGTAAAAAACGCCCGCGGGCAGGGATCCgga > 2:4675243/1‑99 (MQ=9)
cAAAGACCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGaa < 1:4262192/101‑1 (MQ=21)
aaaGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAg < 1:1548351/101‑1 (MQ=21)
aaaGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGCAGAATCGCCTC.GGC.GCAAAGCCCTCTTTATTACCGCCCCCGGACAGGGAGGCGAAg > 2:2596258/1‑101 (MQ=0)
aaaGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGAGGGCTCGCCTC.CGC.GCAAACCCCTTCTAAAAACCCCCCCCGGGGAggggaccgcag > 1:1864919/1‑93 (MQ=0)
aaaGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGAGGCATCGCCTC.GGC.GAAAACCCTTAGTAAAAAACGCCCGCGGGCAGGGATCCGAAg > 1:2147643/1‑101 (MQ=18)
aaGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGGCGGGGGGTCGCCCC.CGCGGAAACCCCTTA.TAAAAACCGCCCGCGGGCAGGGAGCCGGAgg > 1:1042408/1‑101 (MQ=0)
aGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGt < 2:540983/101‑1 (MQ=25)
aGATCCCGGGGGTCCGGGGGCGGAG.....CCCCC.GGCGGGGCGCCGAGGGATCGCCTC.GGC.GAAATCCCCTAGTAAAAACCCCCCGCGGGCCAGGATCCGCAggg > 2:2844906/1‑100 (MQ=9)
gcggg....c.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCAcc < 2:3782478/99‑1 (MQ=255)
g....g.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCt < 2:2074198/101‑1 (MQ=255)
||||
TATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGG.ATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGGG....G.....CCCCC.GGCGGGTCGCCGAGGCATCGCCTC.GGC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCT > NC_014034/2330195‑2330395
Base quality scores:
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 26 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|