Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	2,747,869	+G	100%	intergenic (‑201/+92)	RCAP_rcc02553 ← / ← RCAP_rcc02554	hypothetical protein/NmrA family protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	2,747,869	1	.→G	100.0%	33.6	13	intergenic (‑201/+92)	RCAP_rcc02553/RCAP_rcc02554	hypothetical protein/NmrA family protein
Reads supporting (aligned to +/- strand):  new base (11/2):  ref base (0/0):  total (11/2)

CGACCCGCGTTT.CCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGG.CCC.GCGGCCGAGAAGCGCCCGCC.GGCCGGCTGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCAT  >  NC_014034/2747770‑2747964                                                                                                        |                                                                                                cgccccGGGTTC.CCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGG.CCCGGCGGGCGAGAAGcgcccgcc                                                                                                  <  1:3931988/98‑1 (MQ=21)    ccccgtttccccccGCCCGCAGCGCCCGGTTGCGGCATGCCCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGG.CCCGGCGGGCGAGAAGCGCCCgcc.gg                                                                                               <  1:1071047/91‑1 (MQ=21)     ccgttttt.CCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGG.CCCGGCGGGCGAGAAGCGCCCgcc.ggtc                                                                                             <  2:2520257/96‑3 (MQ=25)      ccgcttccccccGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGG.CCCGGCGGGCGAGAAGCGCCCgcc.gggc                                                                                             <  2:3535408/93‑3 (MQ=21)        tcttcgccccGCCCTAAGCGCCGGGTTGGGGCATGCCCGCTCCACCCCGCACATCAGGGGGCAGCGCCCGG.CCCGGCGGGCGAAAGGCGCCCggc.gggccg                                                                                           <  2:192946/95‑5 (MQ=9)        ggttccccccGCCGGCAGCGCCCGGTTGCGGCATGCCCGCTTCAGCCCGCACCACAGAGGGCAGCGCGCGG.CCCGGCGGGCGAGAAGCGCCCgcc.gggccg                                                                                           <  2:837940/95‑5 (MQ=21)        gcttccccccGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCCCCACAGAGGGCAGCGCCCGG.CCCGGCGGGCGAGAAGCGCCCgcc.gggccg                                                                                           <  1:131274/95‑5 (MQ=21)        cgTTTCCCCCGCCCGCAGCGCCCGGTGGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGG.CCCGGCGGGCGAGAAGCGCCCgcc.gggccg                                                                                           <  1:1474179/101‑5 (MQ=21)                                                  cAGCCCGCACCACAGAGGGCAGCGCCCGG.CCCGGCGGGCGAGAAGCCCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGCGGTCACAGGAc                                                  >  1:2035637/1‑101 (MQ=17)                                                                  gggCACCGCCCGG.CCCGGCGGGCGAGACGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGc                                  <  2:359905/101‑1 (MQ=17)                                                                    gcggcccccggcccc.GCGGCCGAGACGCCGCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCa                                <  2:503121/95‑1 (MQ=18)                                                                           ccgg.cccgGCGGGGGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGAt                         <  2:2035516/101‑1 (MQ=18)                                                                            cgg.cccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATg                        >  1:2063779/1‑101 (MQ=18)                                                                            cgg.cccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATg                        >  2:3401351/1‑101 (MQ=18)                                                                             gg.cccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATgg                       >  2:975865/1‑101 (MQ=18)                                                                                cccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGcc                     >  1:1009587/5‑101 (MQ=18)                                                                                 ccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCt                    >  2:3416581/4‑101 (MQ=21)                                                                                 ccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAACACGATGGCCt                    >  2:1058617/4‑101 (MQ=21)                                                                                  cggcgGGCGAGAAGCGCCCACCGGGCCCGGAGCTACCCGAGGGCCTTTGGGCCCGCGGGGGCCACAGGACCTCGGTGACGCATGGCCAAGGCGATGGCCtt                   >  2:3020093/3‑101 (MQ=21)                                                                                      gggcGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGcc               >  1:2686359/4‑101 (MQ=21)                                                                                         cGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAg            >  1:4282448/1‑101 (MQ=21)                                                                                         cGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAg            >  1:1438350/1‑101 (MQ=21)                                                                                          gagaAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAgg           >  1:2949674/1‑101 (MQ=21)                                                                                           agaAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGt          >  2:2454760/1‑101 (MQ=21)                                                                                                  cccgccgGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCa   >  1:1425880/1‑101 (MQ=21)                                                                                                   ccgccgGGCCGGGCGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCAt  >  2:909916/1‑101 (MQ=21)                                                                                                        |                                                                                                CGACCCGCGTTT.CCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGG.CCC.GCGGCCGAGAAGCGCCCGCC.GGCCGGCTGCTGCCCGAGGGCCTTTGGGCCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGGCCAAGGTCAGCTCAT  >  NC_014034/2747770‑2747964 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 21 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG