| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,995,643 | +C | 7.7% | intergenic (+183/+37) | RCAP_rcc02802 → / ← RCAP_rcc02803 | membrane dipeptidase/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,995,643 | 1 | .→C | 7.7% | 3.7 ‑0.6 ‑0.0 | 39 | intergenic (+183/+37) | RCAP_rcc02802/RCAP_rcc02803 | membrane dipeptidase/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (3/0): ref base (24/12): total (27/12) | ||||||||||
| Fisher's exact test strand distribution p-value = 5.39e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.34e-01 | ||||||||||
GGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCC > NC_014034/2995543‑2995743
|
ggAACACCCCTTCGGTTCCCGCCCCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCcg < 1:4384569/101‑1 (MQ=255)
gaaaCCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCACAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCcc.cg > 1:2061467/2‑101 (MQ=255)
ccccTTCGTTTCCCGCCCCGCACCCCGTGGGCGGCCCGGCGCCCTGTTTTTCTTGGGAAAATT.ACG.CGGGGGGGTGCGG..GGGGGGG.GGCCCCCCG.CGGGTc < 2:1544220/101‑1 (MQ=16)
cccTGCGGGTGCGGCCCCGAAGCCCGTGGGGGGCCCCGCCCCTTGCTTTGCCTGGCCAAAAG.GGG.GGGGGGGGGGGGG..GGGGCGG.AGCCCCCCG.CGGGTCg < 2:1929713/101‑1 (MQ=9)
ttCGGTTGCCCCCGCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTCCCTTGGCAAAAT.AGG.CCGGGGGGTCCGG..GGGGCGG.AGCCCCCCG.CGGGTCGccc < 2:3893328/101‑1 (MQ=18)
ccccccccCCACCCCGTGGGCGCCCCAGCCCCCTTTTTTCCCGGGGCAAAAT.CCG.CGGGGGGGTGGGG..GGGGGGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..g < 1:1419898/97‑1 (MQ=12)
ccGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGGCGCCCCGGCTT..GCCGGGGCGGAATc > 2:4057193/1‑101 (MQ=255)
ccGCCGGCGCCCCAGCCCCCTGCTTTTCCTGGGAAAAAT.GGG.CGGGGGGGTGGGG..GGGGGGG.ACCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATc < 1:4601521/101‑1 (MQ=18)
gccgcggcCCCGGCCCCTTTTTTTCCTTGGGAAAATCGCG.CGGGGGGGGGGGG..GGGGGGG.CCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATccc < 2:2570271/98‑1 (MQ=16)
ggcCCAGCGCCCTGCTTTTCCTTGGCAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAAGCCCCCGCTc > 1:686689/1‑101 (MQ=255)
cccccTGCTTTTCCTTGGCAAAAT.CCG.CGGGGGGGTGGGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCa < 2:2924081/99‑1 (MQ=255)
cTGCTTTTCCTTGGCAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAgaga > 1:632652/1‑101 (MQ=255)
tGCTTTTCCTTGGCAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCTCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCagaggc > 2:3927275/1‑99 (MQ=255)
tttttCCTTGGAAAAAT.ACGCCCGGGGGGTGCGG..GGGGCGG.AGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatc > 2:2611488/2‑95 (MQ=0)
ttCCTTGGAAAAAT.ACGCCCGGGGGGTGCGG..GGGGCGG.AGCCCCCCGCCGGGTCGCCTCGGCGTCCGCCGAGGCGAAATACCCC.CTCAGCccttcatcttg > 1:789505/1‑92 (MQ=0)
ttCCTTGGAAAAAT.ACGCCCGGGGGGTGCGG..GGGGCGG.AGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatcttg > 2:4078231/1‑92 (MQ=0)
ggCAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGAccccc > 1:1263423/1‑98 (MQ=255)
aaaT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAAcc > 1:1094053/1‑101 (MQ=255)
aaaT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAAGCCACCCCTCCGTCCCAGAGCCTTTCGACCTCGAAcc > 1:4107436/1‑101 (MQ=25)
aCG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCCGAGACTTTCGACCTCGAACCGGGt > 2:675890/1‑101 (MQ=255)
cG.CCGGGGGGTGGGG..GGGGCGG.CGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTc < 1:3787334/101‑1 (MQ=255)
cgctgcggggTGCGGGCGGGGCGGTCGCCCCCCGCCGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCg < 1:19759/95‑1 (MQ=255)
ggggggGGGGG..GGGGGGC.CCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAc < 1:1652402/101‑1 (MQ=38)
ggggggCGGGG..GGGGGGC.CCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAc < 1:3013837/101‑1 (MQ=38)
gggTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCCGAcgcg > 2:4639260/1‑101 (MQ=255)
gggTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcgcg > 2:1120709/1‑101 (MQ=255)
ggTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCgg > 1:1332710/1‑101 (MQ=255)
gTGCGG..GGGGAGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GGCGGGGCGAAACCCCCGGCTCCGTCCCAGAGGCTTTGGACCTCGGACCGGGCCACAccccga > 2:1069708/1‑96 (MQ=21)
cGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgc > 1:2073503/1‑101 (MQ=255)
cGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgc > 1:3848689/1‑101 (MQ=255)
gg..ggggCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGAGTTTCGACCTCGAACCGGGTCAGACGCGGATgcg > 1:2287718/1‑101 (MQ=255)
gg..ggggCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcg > 1:2541229/1‑101 (MQ=255)
gggcagggcccccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCa < 1:4400751/92‑1 (MQ=255)
ggCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAgg > 1:3595288/1‑101 (MQ=255)
gCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTGTCGACCTCGAACCCGGGCACACGCGGATGGGCGGGc > 2:3235161/1‑101 (MQ=38)
cGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCg > 2:4360965/1‑101 (MQ=255)
cGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCg > 2:956431/1‑101 (MQ=255)
cGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCg > 2:311191/1‑101 (MQ=255)
cGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCg > 1:709107/1‑101 (MQ=255)
gCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGcc > 2:278433/1‑101 (MQ=255)
gCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGCGGATGCGCAGGCGGGcc > 2:3955297/1‑101 (MQ=255)
ccccccG.CGGGTCGCACCGGCTT..GCCGAGGCGAAATCCCCCGCTCAGTCCCATAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCg > 2:3157541/1‑101 (MQ=255)
cccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGa < 1:311225/101‑1 (MQ=255)
ccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGCCAGACGGGGAGGCGCAGGGGGGcgcaa > 1:928986/1‑97 (MQ=38)
cccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGaaa < 1:1957842/101‑1 (MQ=255)
g.cgGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGcc < 1:2959345/101‑1 (MQ=255)
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GGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAAT.ACG.CCGGGGGGTGCGG..GGGGCGG.AGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCC > NC_014034/2995543‑2995743
Base quality scores:
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 20 ≤
ATCG
< 31 ≤
ATCG
< 39 ≤
ATCG
|