| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,701,433 | +GGGCTTC | 100% | intergenic (+10/+39) | grpE → / ← mutS | GrpE protein/DNA mismatch repair protein MutS |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,701,433 | 1 | .→G | 100.0% | 97.9 | 37 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/36): ref base (0/1): total (0/37) | ||||||||||
| * | NC_014034 | 3,701,433 | 2 | .→G | 100.0% | 98.7 | 37 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/36): ref base (0/1): total (0/37) | ||||||||||
| * | NC_014034 | 3,701,433 | 3 | .→G | 100.0% | 96.3 | 37 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/36): ref base (0/1): total (0/37) | ||||||||||
| * | NC_014034 | 3,701,433 | 4 | .→C | 100.0% | 97.5 | 37 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/36): ref base (0/1): total (0/37) | ||||||||||
| * | NC_014034 | 3,701,433 | 5 | .→T | 100.0% | 97.6 | 37 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/36): ref base (0/1): total (0/37) | ||||||||||
| * | NC_014034 | 3,701,433 | 6 | .→T | 100.0% | 98.1 | 37 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/36): ref base (0/1): total (0/37) | ||||||||||
| * | NC_014034 | 3,701,433 | 7 | .→C | 100.0% | 98.0 | 37 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/36): ref base (0/1): total (0/37) | ||||||||||
CATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGG.......G.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTAAAG > NC_014034/3701333‑3701504
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catcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg < 2:1200766/101‑1 (MQ=255)
catcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg < 1:859169/101‑1 (MQ=255)
atTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggc < 1:1077816/101‑4 (MQ=255)
tCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggctt < 2:2516687/101‑6 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 2:1453788/101‑7 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 2:1025309/101‑7 (MQ=255)
gTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcgcc < 1:3297190/101‑10 (MQ=255)
tGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcgccc < 1:180029/101‑11 (MQ=255)
tGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcgccc < 2:1234503/101‑11 (MQ=255)
ctgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATAtttt < 2:3130132/101‑1 (MQ=21)
ctgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATAtttt < 1:2576188/101‑1 (MQ=21)
tgcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTc < 2:3662048/101‑1 (MQ=21)
gcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCa < 1:48815/101‑1 (MQ=21)
cGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCa < 2:2074178/101‑1 (MQ=21)
cGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCa < 1:3000666/101‑1 (MQ=21)
gACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCaa < 2:1159207/101‑1 (MQ=21)
aCCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAg < 2:2103242/101‑1 (MQ=21)
ccGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGa < 1:4428370/101‑1 (MQ=21)
cGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGAt < 1:1203388/101‑1 (MQ=21)
cGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGAt < 1:4609444/101‑1 (MQ=21)
ctgctgCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATaaa < 1:16531/101‑1 (MQ=21)
ctgctgCGTCCCGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATaaa < 1:1930486/101‑1 (MQ=21)
ctgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGAt < 2:976552/101‑1 (MQ=21)
ctgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGAt < 2:3819192/101‑1 (MQ=21)
gcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCa < 1:4662126/101‑1 (MQ=21)
gcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCa < 2:3945348/101‑1 (MQ=21)
cGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAg < 2:4429635/101‑1 (MQ=21)
cGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAg < 2:2201751/101‑1 (MQ=21)
gTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGt < 2:4457076/101‑1 (MQ=21)
gTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGt < 2:1099706/101‑1 (MQ=21)
gCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTc < 1:752606/101‑1 (MQ=21)
gCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTc < 1:2311689/101‑1 (MQ=21)
gCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGG.......GGGCTTCTCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTc < 2:774777/101‑1 (MQ=25)
ggAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCa < 2:1683700/100‑1 (MQ=21)
gAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAg < 2:3282769/101‑1 (MQ=21)
aaaGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGa < 1:1111416/101‑1 (MQ=21)
aaaGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGa < 2:2295580/101‑1 (MQ=21)
tCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAggg < 1:2461314/101‑1 (MQ=21)
ggCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgcg < 2:4361228/101‑1 (MQ=21)
ggCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgcg < 2:4657781/101‑1 (MQ=21)
cGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgcgcg < 1:1318645/101‑1 (MQ=21)
cGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGt < 2:4629835/101‑1 (MQ=21)
gATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTa < 2:477106/101‑1 (MQ=21)
gATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTa < 2:1434016/101‑1 (MQ=21)
aTGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTaa < 1:489742/101‑1 (MQ=21)
aTGCCGAAAGCCTGAGGCAGGCCGGGGCCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTaa < 1:3934272/101‑1 (MQ=21)
gCCGAAAGCCTGAGGCAGGCCGGGGGCTTCG.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTAAAg < 2:4247543/101‑1 (MQ=21)
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CATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGG.......G.......CCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTAAAG > NC_014034/3701333‑3701504
Base quality scores:
ATCG
< 3 ≤
ATCG
< 22 ≤
ATCG
< 30 ≤
ATCG
< 35 ≤
ATCG
< 41 ≤
ATCG
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