New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744807	48 (0.250)	17 (0.090)	10/164	22.5	0.28	intergenic (+192/+20)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	1699965 =	38 (0.160)					intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGT  >  NC_014034/1699866‑1700064                                                                                                      |                                                                                                    ggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATAcc                                                                                                    >  2:3889746/1‑101 (MQ=255)                      ggcAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATcccgaa                                                                               <  2:4020392/100‑6 (MQ=255)                                  gCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGAt                                                                   <  2:1996347/101‑1 (MQ=255)                                   ccATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATc                                                                  <  2:1658062/101‑1 (MQ=255)                                      tCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGa                                                               <  1:3889988/101‑1 (MQ=255)                                            gCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAg                                                         <  2:552292/101‑1 (MQ=255)                                                                cccgccgggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGc                                      >  2:4199951/10‑101 (MQ=25)                                                                       ggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGaa                               <  2:3890685/99‑1 (MQ=38)                                                                        gtCGCCTCGGC.GTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGaaa                              >  2:2477252/2‑101 (MQ=38)                                                                         tCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAAc                             <  2:3803624/101‑1 (MQ=38)                                                                         tCGCCTCGGC.GTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAAc                             >  1:1129928/1‑101 (MQ=38)                                                                          cGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACa                            >  1:1383662/1‑101 (MQ=38)                                                                          cGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACa                            >  1:226074/1‑101 (MQ=38)                                                                              ctcggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGc                         <  1:2374993/91‑1 (MQ=255)                                                                               tcggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCg                        >  1:3511680/10‑101 (MQ=255)                                                                               tcggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCg                        >  1:4659711/10‑101 (MQ=255)                                                                                 ggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTc                      >  1:45591/8‑101 (MQ=255)                                                                                  gcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCg                     <  1:2131078/95‑1 (MQ=255)                                                                                  gcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCg                     <  2:3773079/95‑1 (MQ=255)                                                                                  gcgccagcCGAGGCGAACTCCCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCg                     <  2:4268011/95‑1 (MQ=255)                                                                                   cgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGc                    >  2:3162534/6‑101 (MQ=255)                                                                                    gtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCa                   >  2:680333/5‑101 (MQ=255)                                                                                    gtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCa                   >  1:394444/5‑101 (MQ=255)                                                                                    gtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCa                   >  2:2158106/5‑101 (MQ=255)                                                                                    gtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCa                   >  2:2448327/5‑101 (MQ=255)                                                                                      cagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAat                 >  1:4340825/3‑101 (MQ=255)                                                                                      cagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAat                 >  2:1310928/3‑101 (MQ=255)                                                                                      cagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAat                 >  2:4483307/3‑101 (MQ=255)                                                                                       agcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAata                >  1:2084427/2‑101 (MQ=255)                                                                                       agcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAata                >  1:934543/2‑101 (MQ=255)                                                                                         ccGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATAtt              >  2:780075/1‑101 (MQ=255)                                                                                         ccGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATAtt              <  1:1414313/101‑1 (MQ=255)                                                                                            aGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCg           >  1:1175464/1‑101 (MQ=255)                                                                                            aGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCg           >  2:2239645/1‑101 (MQ=255)                                                                                            aGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGGCGCAATATTGCg           >  1:2371483/1‑101 (MQ=255)                                                                                             ggCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCgg          >  1:803479/1‑101 (MQ=255)                                                                                               cGAAATACCCCCTGAGCCCTTCATCTTGAAGCCTCTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGAc        <  1:4078473/101‑1 (MQ=255)                                                                                               cGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGAc        >  1:930967/1‑101 (MQ=255)                                                                                               cGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGAc        <  2:226049/101‑1 (MQ=255)                                                                                               cGAAATACCCCCTAAGCCCTTCATCTTGAAGCCCTTGCAGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCACTATTGCGGAc        >  2:1323763/1‑101 (MQ=255)                                                                                                gAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACa       >  2:3378469/1‑101 (MQ=255)                                                                                                gAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACa       >  1:2535378/1‑101 (MQ=255)                                                                                                gAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACa       >  2:721038/1‑101 (MQ=255)                                                                                                 aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGTTTCACCGGATAATCGGCCGAGAAACAGGCGCCGCAAGATTGCGGACAg      >  1:2816906/1‑101 (MQ=255)                                                                                                 aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAg      >  1:4538257/1‑101 (MQ=255)                                                                                                 aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCCCGATATTGCGGACAg      >  2:4513162/1‑101 (MQ=255)                                                                                                  aaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAgg     >  1:2444022/1‑101 (MQ=255)                                                                                                   aTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGc    >  2:3239884/1‑101 (MQ=255)                                                                                                   aTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGc    >  1:2046904/1‑101 (MQ=255)                                                                                                   aTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGc    >  2:2371191/1‑101 (MQ=255)                                                                                                    tACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCg   >  2:3327403/1‑101 (MQ=255)                                                                                                    tACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCg   <  2:3511468/101‑1 (MQ=255)                                                                                                     aCCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGt  >  1:3307498/1‑101 (MQ=255)                                                                                                      |                                                                                                    GGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGT  >  NC_014034/1699866‑1700064 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG