Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	974,303	1	.→G	100.0%	3.2	4	intergenic (+183/+76)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/1):  ref base (0/1):  total (2/2)

CCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGG.GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGT  >  NC_014034/974206‑974376                                                                                                    |                                                                              ccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccccg                                                                              >  1:701768/1‑99 (MQ=255)  cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTTCGACAAATATCCC.ggg                                                                            >  1:1145847/1‑101 (MQ=38)   ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATCCC.ggg.g                                                                          >  1:2187485/1‑101 (MQ=255)   ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGGTTTCACCTTGGGAAAAATATACC.ggg.g                                                                          >  1:72345/1‑101 (MQ=38)     aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.cgg.ggg                                                                        >  1:152228/1‑99 (MQ=255)         cccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAAAATCCC.ggg.gggccgg                                                                    >  2:958585/1‑95 (MQ=38)          ccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggg.ggtccggg                                                                   <  1:1834986/101‑8 (MQ=39)            aGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTANCTTGCGACAAAAATCAC.ggg.gggcccgggg                                                                 >  1:925668/1‑92 (MQ=255)            aGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggg.ggtccggggg                                                                 >  2:4244008/1‑92 (MQ=38)                                         ggcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGTGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGAc                                     <  2:2987509/101‑1 (MQ=14)                                          gcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATAGCCCGGGG.GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACa                                    <  2:2114038/101‑1 (MQ=9)                                                                          tGTTTTCACCTTGCGACAAATATCCCGGGG.GTCCGGGGGCGGAGCCCCCGGCGGGGCGCCCCGGCGGCCGCCGCGGCGGAAGACCCCGCCCGCCACGGCCg    >  1:2726051/1‑101 (MQ=2)                                                                            ttttCACCTTGCGACAAATATCCCGGGG.GTCCGGGGGCGGAGCCCCCGGCGGGGGGGCTCCGCGCCAGCCGAGGCGAAAAAACCCCACCGCCACCGGCggg  >  2:4487285/1‑100 (MQ=9)                                                                                                    |                                                                              CCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGG.GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGT  >  NC_014034/974206‑974376 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG