Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	974,313	1	.→C	100.0%	5.3	4	intergenic (+193/+66)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/2):  ref base (0/0):  total (2/2)

GGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGG.GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGT  >  NC_014034/974246‑974376                                                                          |                                                                ggcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGTGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGAc                                     <  2:2987509/101‑1 (MQ=14)  gcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATAGCCCGGGG.GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACa                                    <  2:2114038/101‑1 (MQ=9)                                  tGTTTTCACCTTGCGACAAATATCCCGGGG.GTCCGGGGGCGGAGCCCCCGGCGGGGCGCCCCGGCGGCCGCCGCGGCGGAAGACCCCGCCCGCCACGGCCg    >  1:2726051/1‑101 (MQ=2)                                    ttttCACCTTGCGACAAATATCCCGGGG.GTCCGGGGGCGGAGCCCCCGGCGGGGGGGCTCCGCGCCAGCCGAGGCGAAAAAACCCCACCGCCACCGGCggg  >  2:4487285/1‑100 (MQ=9)                                                                          |                                                                GGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGG.GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGT  >  NC_014034/974246‑974376 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 25 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG