| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,860 | G→C | 17.3% | intergenic (‑284/‑119) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,860 | 0 | G→C | 17.3% | 3.0 ‑1.2 0.0 | 42 | intergenic (‑284/‑119) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/8): ref base (7/27): total (7/35) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.12e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
CCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....GTC....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG > NC_014034/1732761‑1732949
|
ccccccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...c < 2:3988796/101‑1 (MQ=255)
cccccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG...cc > 1:341403/1‑101 (MQ=255)
cccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...cccc < 1:1765949/101‑1 (MQ=255)
cccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...cccc < 2:4553171/101‑1 (MQ=255)
ccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...ccccc < 1:458013/101‑1 (MQ=255)
ccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG...ccccc > 2:3759142/1‑101 (MQ=255)
cTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...cccccc < 1:440951/101‑1 (MQ=255)
tGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....g < 1:2245203/101‑1 (MQ=255)
gCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG...CCCCCC....gc > 2:1356922/1‑100 (MQ=255)
cAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....gcg < 1:1302915/101‑3 (MQ=255)
cAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....gcg > 2:378361/1‑99 (MQ=255)
cAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG...ccccccccg > 2:768732/1‑98 (MQ=255)
aGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG...gccccccccg > 1:1794362/1‑97 (MQ=255)
ccGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGGGGGGGGTGAAG...CCCCCC....gcgggt < 1:2226069/101‑6 (MQ=255)
ccGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG...ccgcccccgggg > 2:510491/1‑95 (MQ=255)
cGCATGCCGTGCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAGC...ccccccccggcgg > 2:3154175/1‑94 (MQ=255)
gCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG...gcccccccgcgggg > 1:3378073/1‑93 (MQ=255)
gCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG...gccccccccggcgg > 2:427839/1‑93 (MQ=255)
cATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAG...gcccccccggggggc > 2:4198391/1‑92 (MQ=255)
cATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGAAG...gcccccccgggggcc > 1:3167740/1‑92 (MQ=255)
cAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTTTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCg < 1:2328063/101‑1 (MQ=21)
gCAAAGGCCGTGTTTTCCCTGGGTAAATTAGCCCCTTCTTTCTTTTGGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGa < 2:1260467/101‑1 (MQ=2)
ggCCCCTCTTTTCCTAGGCAAAATACGCCTTTCTTTCTTTTCGGGGGGGGGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCt < 1:796689/101‑1 (MQ=18)
ccccctttttCCAAAGGAAAAATCCCCTTTTTTTTTTTTGGGGGGGGGGGGGGGGGAAC...CCCCCC....CGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCtt < 2:1029882/95‑1 (MQ=2)
ccccGCTTTTCCTAGGCAAAATACGCCTTTCTTTCTTTTGGGGGGGGGGGGGGGTGAAC...CCCCCC....GCGGGT.CGCCTCGGGCTTGCCCGAGGCGAAAGCTTc < 1:2957995/101‑1 (MQ=18)
ccccGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....GCGGGT.CGCCTCGGGCTTGCCCGAGGCGAAAGCTTc < 2:433158/101‑1 (MQ=21)
cGCTTTTCCTAGGCAAAATCCCCCCTTCTTTCTTTTGGGGGGGGCGGGGGGTGAAG...CCCCCC....GCGGGT.CGCCTCGGGCTTGCCCGAGGCGAAAGCTTcccc < 2:4653146/101‑1 (MQ=17)
cGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....GCGGGT.CGCCTCGGGCTTGCCCGAGGCGAAAGCTTcccc < 2:4695634/101‑1 (MQ=21)
tttttCCCAGGAAAAACCCCCCTTTTTTTTTTTGGGGGGGGGGGGGGGGGGAAC...CCCCCCCGCGGGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTccccc < 1:3492410/100‑1 (MQ=2)
tttCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGt < 2:431960/101‑1 (MQ=21)
ttCCTAGTCAAAATCCGCCTTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 2:2829377/101‑1 (MQ=17)
ttCCTAGGCAAATTGCGCCCTTGTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 1:1582472/101‑1 (MQ=17)
ttCCTAGGCAAAATACGTCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 2:3091519/101‑1 (MQ=18)
ttCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 2:1272338/101‑1 (MQ=21)
ttCCGAGGCAAAATACGCCCTTCTTGCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 2:341369/101‑1 (MQ=18)
ccaaGGCAAAATACGCCGTTATTTCTTTTGGGGGGGGCTGGGGTGGAAA...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGaa < 2:551001/98‑1 (MQ=9)
tAGGCAAAATCCGCCCTTCTTTCTTTGCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGA....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGaaaa < 2:2422101/101‑1 (MQ=18)
gaGGAAAAACCCGCCCTTTTTTCTTTGGGGGGGGGCGGGGGGGGAAC...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGaaaa < 2:1662226/100‑1 (MQ=2)
aaaaTACGCCCTTCTTTCTTTTGGGGGGGGGGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTg < 1:3571116/101‑1 (MQ=18)
tACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGGCCCCCCCCG...GGG....GGCCCCGGGCTTCCCCCGGGGGGAAGCTTCCCCCCCCGGAAACCTTCccc > 2:2996899/1‑100 (MQ=255)
ccGCCTTTTTTTTTTTGGGGGGGGGGGGGGGGTGAAC...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgc < 1:2659567/100‑1 (MQ=9)
aCGCCCTTCTTTCTTTTCGGGGGGGGGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgc < 2:1382433/101‑1 (MQ=21)
cGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 1:666771/101‑1 (MQ=21)
cctttcttgctTTTGGGGGGGCCGGGGGGTGAGG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcgcg < 2:4616448/98‑1 (MQ=17)
tttttttgggggggggGGGGGGGTGACC...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGc < 1:4134160/92‑1 (MQ=12)
tttttGGGGGGGGGGGGGGGGAAAC...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt < 1:761539/100‑1 (MQ=18)
ttttgggggggggCGGGGGGTAAAC...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt < 2:1821016/95‑1 (MQ=17)
ggggggggCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCtt < 2:293113/100‑1 (MQ=18)
gggggggCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCttt < 2:4647188/101‑1 (MQ=21)
ggCGGGGGGTGATG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGcc < 1:768806/101‑1 (MQ=21)
ggCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGcc < 2:1496928/101‑1 (MQ=21)
cGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGcccc > 2:3334962/1‑100 (MQ=21)
ggggggTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGGGGCGAAAGCTTCCCCCCGTGACAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCgg > 1:1832212/1‑101 (MQ=21)
ggggggTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTTCCTTTCGGCCCgg > 2:3642628/1‑101 (MQ=21)
ggggggTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGccccg > 2:621535/1‑99 (MQ=21)
ggggggTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCgg > 2:196821/1‑101 (MQ=21)
ggggTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCTCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGgcc > 1:1860244/1‑100 (MQ=21)
|
CCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....GTC....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG > NC_014034/1732761‑1732949
Base quality scores:
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 21 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
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