Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_014034 | 1,732,869 | C→G | 12.5% | intergenic (‑293/‑110) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | NC_014034 | 1,732,869 | 0 | T→G | 12.5% | 6.8 0.0 ‑1.4 | 35 | intergenic (‑293/‑110) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
Reads supporting (aligned to +/- strand): new base (0/4): ref base (6/23): total (6/29) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 3.84e-02 |
CAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....GTC....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG > NC_014034/1732789‑1732949
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cAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTTTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCg < 1:2328063/101‑1 (MQ=21)
gCAAAGGCCGTGTTTTCCCTGGGTAAATTAGCCCCTTCTTTCTTTTGGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGa < 2:1260467/101‑1 (MQ=2)
ggCCCCTCTTTTCCTAGGCAAAATACGCCTTTCTTTCTTTTCGGGGGGGGGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCt < 1:796689/101‑1 (MQ=18)
ccccctttttCCAAAGGAAAAATCCCCTTTTTTTTTTTTGGGGGGGGGGGGGGGGGAAC...CCCCCC....CGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCtt < 2:1029882/95‑1 (MQ=2)
ccccGCTTTTCCTAGGCAAAATACGCCTTTCTTTCTTTTGGGGGGGGGGGGGGGTGAAC...CCCCCC....GCGGGT.CGCCTCGGGCTTGCCCGAGGCGAAAGCTTc < 1:2957995/101‑1 (MQ=18)
ccccGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....GCGGGT.CGCCTCGGGCTTGCCCGAGGCGAAAGCTTc < 2:433158/101‑1 (MQ=21)
cGCTTTTCCTAGGCAAAATCCCCCCTTCTTTCTTTTGGGGGGGGCGGGGGGTGAAG...CCCCCC....GCGGGT.CGCCTCGGGCTTGCCCGAGGCGAAAGCTTcccc < 2:4653146/101‑1 (MQ=17)
cGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....GCGGGT.CGCCTCGGGCTTGCCCGAGGCGAAAGCTTcccc < 2:4695634/101‑1 (MQ=21)
tttttCCCAGGAAAAACCCCCCTTTTTTTTTTTGGGGGGGGGGGGGGGGGGAAC...CCCCCCCGCGGGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTccccc < 1:3492410/100‑1 (MQ=2)
tttCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGt < 2:431960/101‑1 (MQ=21)
ttCCTAGTCAAAATCCGCCTTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 2:2829377/101‑1 (MQ=17)
ttCCTAGGCAAATTGCGCCCTTGTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 1:1582472/101‑1 (MQ=17)
ttCCTAGGCAAAATACGTCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 2:3091519/101‑1 (MQ=18)
ttCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 2:1272338/101‑1 (MQ=21)
ttCCGAGGCAAAATACGCCCTTCTTGCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTg < 2:341369/101‑1 (MQ=18)
ccaaGGCAAAATACGCCGTTATTTCTTTTGGGGGGGGCTGGGGTGGAAA...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGaa < 2:551001/98‑1 (MQ=9)
tAGGCAAAATCCGCCCTTCTTTCTTTGCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGA....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGaaaa < 2:2422101/101‑1 (MQ=18)
gaGGAAAAACCCGCCCTTTTTTCTTTGGGGGGGGGCGGGGGGGGAAC...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGaaaa < 2:1662226/100‑1 (MQ=2)
aaaaTACGCCCTTCTTTCTTTTGGGGGGGGGGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTg < 1:3571116/101‑1 (MQ=18)
tACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGGGGAGGCCCCCCCCG...GGG....GGCCCCGGGCTTCCCCCGGGGGGAAGCTTCCCCCCCCGGAAACCTTCccc > 2:2996899/1‑100 (MQ=255)
ccGCCTTTTTTTTTTTGGGGGGGGGGGGGGGGTGAAC...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgc < 1:2659567/100‑1 (MQ=9)
aCGCCCTTCTTTCTTTTCGGGGGGGGGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgc < 2:1382433/101‑1 (MQ=21)
cGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 1:666771/101‑1 (MQ=21)
cctttcttgctTTTGGGGGGGCCGGGGGGTGAGG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcgcg < 2:4616448/98‑1 (MQ=17)
tttttttgggggggggGGGGGGGTGACC...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGc < 1:4134160/92‑1 (MQ=12)
tttttGGGGGGGGGGGGGGGGAAAC...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt < 1:761539/100‑1 (MQ=18)
ttttgggggggggCGGGGGGTAAAC...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt < 2:1821016/95‑1 (MQ=17)
ggggggggCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCtt < 2:293113/100‑1 (MQ=18)
gggggggCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCttt < 2:4647188/101‑1 (MQ=21)
ggCGGGGGGTGATG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGcc < 1:768806/101‑1 (MQ=21)
ggCGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGcc < 2:1496928/101‑1 (MQ=21)
cGGGGGGTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGcccc > 2:3334962/1‑100 (MQ=21)
ggggggTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGGGGCGAAAGCTTCCCCCCGTGACAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCgg > 1:1832212/1‑101 (MQ=21)
ggggggTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTTCCTTTCGGCCCgg > 2:3642628/1‑101 (MQ=21)
ggggggTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGccccg > 2:621535/1‑99 (MQ=21)
ggggggTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCgg > 2:196821/1‑101 (MQ=21)
ggggTGAAG...CCCCCCGCG.GGT....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCTCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGgcc > 1:1860244/1‑100 (MQ=21)
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CAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTCGGGGGGGCGGGGGGTGAAG...CCCCCC....GTC....CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG > NC_014034/1732789‑1732949
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 20 ≤
ATCG
< 31 ≤
ATCG
< 39 ≤
ATCG
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