| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,249,347 | G→C | 6.4% | intergenic (‑143/‑162) | parE ← / → RCAP_rcc02080 | DNA topoisomerase IV subunit B/HAD superfamily hydrolase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,249,347 | 0 | G→C | 6.4% | 24.3 ‑3.0 ‑0.3 | 202 | intergenic (‑143/‑162) | parE/RCAP_rcc02080 | DNA topoisomerase IV subunit B/HAD superfamily hydrolase |
| Reads supporting (aligned to +/- strand): new base (3/10): ref base (99/90): total (102/100) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.80e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.37e-01 | ||||||||||
Only 100 of 223 total aligned reads displayed.
AGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTG.CCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.CCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCAT > NC_014034/2249248‑2249446
|
aGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCg < 2:2876313/101‑1 (MQ=255)
gCTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGa > 2:3153886/1‑101 (MQ=255)
cTTGGGCACCCGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGaa < 1:2093815/101‑1 (MQ=255)
tGGGCACCCGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGCCT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGaaaa > 2:2854077/1‑101 (MQ=255)
gggCACCCGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAat < 1:1139155/101‑1 (MQ=255)
gcccccGGGGCAATAAGGGGGCCCTGCCCCCGTGCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAatat < 1:4084169/98‑1 (MQ=37)
gCACCCGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAatat < 1:2824843/101‑1 (MQ=255)
cACCCGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATc < 1:2507587/101‑1 (MQ=255)
cACCCGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATc > 2:2456024/1‑101 (MQ=255)
cccGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATccc > 1:3872759/1‑101 (MQ=255)
ccGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCg < 1:2174623/101‑1 (MQ=255)
ccGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCg > 2:1646760/1‑101 (MQ=255)
ccGGGGCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCg < 2:2943062/101‑1 (MQ=255)
ggggCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCggg > 1:324954/1‑101 (MQ=255)
gCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCgggggg > 2:2081947/1‑101 (MQ=255)
gCAAGAAGGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCgggggg > 2:3089151/1‑101 (MQ=255)
aagaagGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTg < 2:1187929/101‑1 (MQ=255)
aagaagGGGGCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTg > 2:4170689/1‑101 (MQ=255)
aagGGGGCTCGGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.t < 1:3553316/101‑1 (MQ=255)
agGGGCCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGT.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.Tg < 1:4413950/101‑1 (MQ=38)
agGCGGCTCTCCCCCCGCCCCGTCCCGGGCCC.CCCCCGGT.ATTTTGGAGGCAAGATGAG...GGGG..GCCTTTCTCCTTGCCAAAAATATCCCGGGGGGTGAA.Tg < 2:883553/101‑1 (MQ=16)
ggggCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGgc > 2:3586307/1‑101 (MQ=255)
ggggCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGgc > 2:674612/1‑101 (MQ=255)
ggCTCTGCCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGgcgc < 1:110420/101‑1 (MQ=255)
tctgcccccGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..Gc > 1:264106/6‑101 (MQ=255)
tctgcccccGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..Gc > 1:999976/6‑101 (MQ=255)
ctgcccccGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..Gcc < 1:3605719/97‑1 (MQ=255)
gcccccGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCag > 2:60642/3‑101 (MQ=255)
cccccGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCaga > 2:4300532/2‑101 (MQ=255)
ccgcgtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCagag > 1:3510041/4‑101 (MQ=255)
ccccGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCagag < 1:3116734/101‑1 (MQ=255)
cgtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAgggg > 1:4450149/1‑101 (MQ=255)
cgtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAgggg > 2:81113/1‑101 (MQ=255)
cgtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAgggg > 2:45967/1‑101 (MQ=255)
ccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCa > 2:2215383/1‑101 (MQ=255)
ccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCa > 2:4528299/1‑101 (MQ=255)
cgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGT..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg < 2:3509829/101‑1 (MQ=255)
cgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg < 1:4495603/101‑1 (MQ=255)
cgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGGGAA.TGGCGCA..GCCAGAGGGGGGCAg > 1:1718570/1‑101 (MQ=255)
cgcaagcggACTCCCCCCGGG.ATATTTGCAGCAAGATGAAACCGGAT..GCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCGAA..GCCAGAggggg < 1:3922950/94‑1 (MQ=18)
cgcaagcggACTCCCCCCGGG.ATATTTGCAGCAAGATGAAACCGGAT..GCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCGAA..GCCAGAggggg < 2:4734452/94‑1 (MQ=18)
gtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGTAAATATCCCGGGGGGGGAA.TGGCGCA..GCCAGAGGGGGGCAg.c > 2:4617883/1‑101 (MQ=255)
gcaagcggACTCCCCCCGGG.ATATTTGCAGCAAGATGAAACCGGAT..GCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCGAA..GCCAGAgggggg < 1:3576625/95‑1 (MQ=18)
tGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg.cg > 2:717203/1‑101 (MQ=255)
gCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg.cg.c > 1:1325977/1‑101 (MQ=255)
gCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg.cg.c > 1:233057/1‑101 (MQ=255)
ccattcaccccccGGG.ATATTTTCGGCAAGATGAA...AGCC..CCCCTTCATCTTGCCGAAAATATCCCGGGGGGCGAA.TGGCGCA..GCCATAGGGGGGCAG.CG.cc > 2:3809676/9‑101 (MQ=11)
ggACTCCCCCCGGG.ATATTTGCAGCAAGATGAAACCGGAT..GCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCGAA..GCCAGAGGGGGGCAg.cg.c < 1:527047/101‑1 (MQ=17)
actccccccGGG.ATATTTGCAGCAAGATGAAACCGGAT..GCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCGAA..GCCAGAGGGGGGCAG.CG.ccc < 2:412404/97‑1 (MQ=17)
aCT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.cccccct > 2:4380080/1‑99 (MQ=255)
t.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.ccccccttc < 1:1557905/101‑5 (MQ=255)
t.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.ccccccttc < 2:1608705/101‑5 (MQ=255)
cccccccGGGAATTTTGGAGGAAAGAGGAG...GGGG..GGTTTTCTTTTTGCAAAAATTACCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.cccccct < 1:3981906/99‑3 (MQ=12)
gcccccGGG.ATATTTGGGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.ccccccttc < 1:4347372/100‑5 (MQ=255)
cccccGTC.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.ccccccttcg < 1:756246/101‑6 (MQ=255)
cccccGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.ccccccttcg > 1:812051/1‑96 (MQ=255)
cccGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTcgcg > 2:1272730/1‑101 (MQ=255)
ccGGG.ATATTTGAGGCAAGATGAA...GGGG..TGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCgcgg < 2:305186/101‑1 (MQ=255)
cGGG.ATATTTGCGGCAAGATGAA...GGGGCATGATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAAAGGCCAAGAGGGGGCAG.CG.CCCCC..tgccc > 2:2731666/1‑97 (MQ=0)
cGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCgcggg > 1:851451/1‑101 (MQ=255)
ggg.ATATTTGGGGCAAGAGGAG...GGGG..GGCTTTCATCTTGCCGAAAATATCCGGGGGGGTGAA.GGGCGGA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCgcgggc < 1:988755/101‑1 (MQ=25)
ggg.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCgcgggc > 2:487361/1‑101 (MQ=255)
tatTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGcc > 2:2176177/1‑101 (MQ=255)
atTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGccc > 1:106802/1‑100 (MQ=255)
atTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCcg < 2:324920/101‑1 (MQ=255)
atTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCcg > 2:1946907/1‑101 (MQ=255)
tttGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCcgc > 1:277983/1‑101 (MQ=255)
ttGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCcgcg < 2:264081/101‑1 (MQ=255)
gAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGAc < 1:1953156/101‑1 (MQ=255)
gggaaaGATGAG...GGGG..GGTTTTCATCTTCCCGAAAATACCGGGGGGGGGGAA.GGGCGCA..GCCAGGGGGGGGCAGCCC.CCCCC..TTCGCGGGCGGCCGCGAcg < 1:3329894/97‑1 (MQ=255)
gCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGAcgcg > 1:1395202/1‑101 (MQ=255)
aaaGATGAG...GGGG..GGTTTTCATCTTGCCGAAAATATCCGGGGGGGTGAA.TGGCGCA..GCCAGGGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGAcgcgc < 1:4168614/100‑1 (MQ=25)
aGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACgcgcg.c > 2:3871958/1‑101 (MQ=255)
gATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGcg.cc < 2:2847709/101‑1 (MQ=255)
aTGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGGGGCCGCGACGCGgg.ccg > 1:2914682/1‑101 (MQ=25)
aTGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGcg.ccg < 2:1350217/101‑1 (MQ=255)
aTGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGcg.ccg > 2:3922272/1‑101 (MQ=255)
tGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGcc.ccac > 2:3969880/1‑99 (MQ=255)
a...GGGG..GGCTTTCATCTTGCCGAAAATATCGCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAAc < 2:334307/101‑1 (MQ=255)
a...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGCCGCGCG.CCGCAAc > 1:2214648/1‑101 (MQ=255)
a...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAAc > 1:2704383/1‑101 (MQ=255)
a...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAAc < 2:244620/101‑1 (MQ=255)
gggg..ggCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACa < 1:2747345/101‑1 (MQ=255)
gggg..ggCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACa > 1:2461999/1‑101 (MQ=255)
ggCTTTGATCTTGCCGAAACTAGCCCGGGGGGTGAA.TGGCGCA..GCCAGGGGGGGGCGG.CGCCCCCC..TTCGCGGGCGGCCGCGAGGCGCG.CCGCAACAGGTc < 2:4687873/101‑1 (MQ=25)
ggCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTc < 2:4536517/101‑1 (MQ=255)
gCTTTCATCTTGCCGAAAATATCCCGGGGGGGGAA.TGGCGCA..GCCAGAGGGGGGCAG.GGCCCCCC..TTCCCGGGCGGCCGCGCGGCGCG.CCGCacaaggccg > 2:1752640/1‑93 (MQ=25)
cTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGt > 1:2047668/1‑101 (MQ=255)
tttCTTCTGGCGAAAAATCCCCGGGGGGGTGAA.TGGCGCC..GCCAGGGGGGGGCCG.CC.CCCCCCTTTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGt < 2:4029008/101‑1 (MQ=255)
ttCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGc > 2:1795035/1‑101 (MQ=255)
tCATCTTGCCGAAAATATCCCGGGGGGGGAA.TGGCGCA..GCCAGAGGGGGGCGG.CC.CCCCC..CTCGCGGGGCGCCCCGACGCGGGCCCGAAACAGGCGGTGcc > 2:2356170/1‑101 (MQ=16)
cATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGccc < 2:358880/101‑1 (MQ=255)
aTCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGcccc > 2:3437060/1‑101 (MQ=255)
cTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCtt > 1:1769054/1‑101 (MQ=255)
gCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGt < 1:4658713/101‑1 (MQ=255)
gCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGt < 1:674676/101‑1 (MQ=255)
cGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCa > 1:3733537/1‑101 (MQ=255)
gAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAGCCC.CCCCC..TTCGCGGGGGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCAt < 1:1468801/101‑1 (MQ=38)
gAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCAt < 1:4294672/101‑1 (MQ=255)
gAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCAt < 1:3002827/101‑1 (MQ=255)
|
AGCTTGGGCACCCGGGGCAAGAAGGGGGCTCTG.CCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..GGCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.CCCCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCAT > NC_014034/2249248‑2249446
Base quality scores:
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 25 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|